Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   E4J95_RS04870 Genome accession   NZ_CP038229
Coordinates   1003529..1004098 (-) Length   189 a.a.
NCBI ID   WP_072419948.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MJ163     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 998529..1009098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4J95_RS04850 (E4J95_05065) - 1000034..1001392 (+) 1359 WP_169449271.1 TrkH family potassium uptake protein -
  E4J95_RS04855 (E4J95_05070) - 1001531..1003042 (+) 1512 WP_000414184.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  E4J95_RS04870 (E4J95_05085) comK/comK1 1003529..1004098 (-) 570 WP_072419948.1 competence protein ComK Regulator
  E4J95_RS04875 (E4J95_05090) - 1004308..1004526 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  E4J95_RS04880 (E4J95_05095) - 1004607..1005593 (-) 987 WP_000668820.1 lipoate--protein ligase -
  E4J95_RS04885 (E4J95_05100) - 1005792..1005968 (+) 177 WP_000214898.1 YkvS family protein -
  E4J95_RS04890 (E4J95_05105) - 1005983..1006585 (+) 603 WP_001033867.1 CPBP family glutamic-type intramembrane protease -
  E4J95_RS13610 - 1006901..1006963 (+) 63 WP_228764722.1 hypothetical protein -
  E4J95_RS04900 (E4J95_05115) - 1007502..1007603 (+) 102 WP_001790623.1 hypothetical protein -
  E4J95_RS04905 (E4J95_05120) - 1007625..1007885 (+) 261 WP_130137088.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22582.78 Da        Isoelectric Point: 9.4726

>NTDB_id=352433 E4J95_RS04870 WP_072419948.1 1003529..1004098(-) (comK/comK1) [Staphylococcus aureus strain MJ163]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIEHSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=352433 E4J95_RS04870 WP_072419948.1 1003529..1004098(-) (comK/comK1) [Staphylococcus aureus strain MJ163]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
CGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACACTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995

Multiple sequence alignment