Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   GFX43_RS11975 Genome accession   NZ_CP046448
Coordinates   2300922..2301539 (+) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis strain ZD01     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2295922..2306539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS11940 (GFX43_011940) ynzD 2296164..2296337 (+) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -
  GFX43_RS11945 (GFX43_011945) yneF 2296411..2296629 (-) 219 WP_003221221.1 YneF family protein -
  GFX43_RS11950 (GFX43_011950) sirA 2296715..2297161 (-) 447 WP_015383766.1 sporulation inhibitor of replication protein SirA -
  GFX43_RS11955 (GFX43_011955) recP/tkt 2297314..2299317 (-) 2004 WP_015483285.1 transketolase Machinery gene
  GFX43_RS11960 (GFX43_011960) ynzC 2299486..2299719 (-) 234 WP_003231595.1 DUF896 domain-containing protein -
  GFX43_RS11965 (GFX43_011965) dinL 2299783..2300436 (-) 654 WP_015383764.1 recombinase family protein -
  GFX43_RS11970 (GFX43_011970) yneA 2300455..2300772 (-) 318 WP_003231598.1 cell division suppressor protein YneA -
  GFX43_RS11975 (GFX43_011975) dinR/lexA 2300922..2301539 (+) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  GFX43_RS20710 - 2301892..2302168 (-) 277 Protein_2340 hypothetical protein -
  GFX43_RS11980 (GFX43_011980) fosB 2302077..2302511 (-) 435 WP_015383763.1 metallothiol transferase FosB -
  GFX43_RS11985 (GFX43_011985) - 2302717..2303166 (+) 450 WP_015483284.1 YndM family protein -
  GFX43_RS11990 (GFX43_011990) pghL 2303193..2303951 (-) 759 WP_015383761.1 gamma-polyglutamate hydrolase PghL -
  GFX43_RS11995 (GFX43_011995) - 2304176..2304490 (-) 315 WP_174616646.1 hypothetical protein -
  GFX43_RS12000 (GFX43_012000) yndJ 2304577..2306217 (-) 1641 WP_015383759.1 YndJ family protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=352388 GFX43_RS11975 WP_003238209.1 2300922..2301539(+) (dinR/lexA) [Bacillus subtilis strain ZD01]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=352388 GFX43_RS11975 WP_003238209.1 2300922..2301539(+) (dinR/lexA) [Bacillus subtilis strain ZD01]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTTAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTGGAAACAAAAG
GACTGATCAGACGGGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCTGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCCGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCGATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACCCACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1