Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   GFX43_RS11300 Genome accession   NZ_CP046448
Coordinates   2140480..2142255 (+) Length   591 a.a.
NCBI ID   WP_015383859.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2135480..2147255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS11250 (GFX43_011250) yozC 2135918..2136121 (+) 204 WP_003231245.1 DUF6501 family protein -
  GFX43_RS11255 (GFX43_011255) yozO 2136475..2136819 (+) 345 WP_003220141.1 PH domain-containing protein -
  GFX43_RS11260 (GFX43_011260) - 2136904..2137137 (-) 234 WP_003231251.1 hypothetical protein -
  GFX43_RS11265 (GFX43_011265) - 2137142..2137405 (-) 264 WP_004399338.1 hypothetical protein -
  GFX43_RS11270 (GFX43_011270) yocM 2137472..2137948 (+) 477 WP_003231255.1 salt stress-responsive protein YocM -
  GFX43_RS11275 (GFX43_011275) - 2137935..2138162 (-) 228 WP_015383862.1 hypothetical protein -
  GFX43_RS11280 (GFX43_011280) - 2138240..2138572 (+) 333 WP_015383861.1 hypothetical protein -
  GFX43_RS11285 (GFX43_011285) stpP 2138647..2139138 (+) 492 WP_014477068.1 TraR/DksA family transcriptional regulator -
  GFX43_RS11290 (GFX43_011290) azoJ 2139289..2139915 (+) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  GFX43_RS11300 (GFX43_011300) recQ 2140480..2142255 (+) 1776 WP_015383859.1 DNA helicase RecQ Machinery gene
  GFX43_RS11305 (GFX43_011305) walN 2142503..2143366 (+) 864 WP_015383858.1 3D domain-containing protein -
  GFX43_RS11310 (GFX43_011310) desR 2143962..2144561 (-) 600 WP_004399356.1 two-component system response regulator DesR -
  GFX43_RS11315 (GFX43_011315) desK 2144580..2145692 (-) 1113 WP_015383857.1 two-component sensor histidine kinase DesK -
  GFX43_RS11320 (GFX43_011320) desE 2145812..2146870 (-) 1059 WP_015383856.1 fatty acid desaturase DesE -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67346.87 Da        Isoelectric Point: 6.4569

>NTDB_id=352385 GFX43_RS11300 WP_015383859.1 2140480..2142255(+) (recQ) [Bacillus subtilis strain ZD01]
MLHRAQSLLAHYFGYEKFRNGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIVVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRDNLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGHCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=352385 GFX43_RS11300 WP_015383859.1 2140480..2142255(+) (recQ) [Bacillus subtilis strain ZD01]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAACGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATTTCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGAATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGTATAGTTGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTTAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCAGAGATAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGTGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTTATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACATTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAATGGCTTTTCCGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAACCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(21-182)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

HRDC domain (HRDC)

(518-583)

RQC domain (RQC)

(403-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.154

100

0.992

Multiple sequence alignment