Detailed information
Bioinformatically predicted
Overview
| Name | rapC | Type | Regulator |
| Locus tag | GFX43_RS08715 | Genome accession | NZ_CP046448 |
| Coordinates | 1697518..1698645 (+) | Length | 375 a.a. |
| NCBI ID | WP_015483467.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain ZD01 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1692518..1703645
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFX43_RS08690 (GFX43_008690) | - | 1693212..1693934 (+) | 723 | WP_015384163.1 | NPP1 family protein | - |
| GFX43_RS20675 | - | 1694180..1694365 (-) | 186 | WP_015384162.1 | SMI1/KNR4 family protein | - |
| GFX43_RS08700 (GFX43_008700) | - | 1694702..1695006 (-) | 305 | Protein_1682 | tRNA-Val4 | - |
| GFX43_RS08705 (GFX43_008705) | cdiI | 1695059..1695418 (-) | 360 | WP_015384160.1 | ribonuclease toxin immunity protein CdiI | - |
| GFX43_RS08710 (GFX43_008710) | - | 1695440..1697332 (-) | 1893 | WP_015483468.1 | T7SS effector LXG polymorphic toxin | - |
| GFX43_RS08715 (GFX43_008715) | rapC | 1697518..1698645 (+) | 1128 | WP_015483467.1 | Rap family tetratricopeptide repeat protein | Regulator |
| GFX43_RS08720 (GFX43_008720) | - | 1699194..1699619 (-) | 426 | WP_046340254.1 | EVE domain-containing protein | - |
| GFX43_RS08725 (GFX43_008725) | - | 1699624..1700016 (-) | 393 | WP_046340253.1 | rhodanese-like domain-containing protein | - |
| GFX43_RS08730 (GFX43_008730) | - | 1700037..1700456 (-) | 420 | WP_015483464.1 | MarR family transcriptional regulator | - |
| GFX43_RS08735 (GFX43_008735) | yrkK | 1700763..1701239 (+) | 477 | WP_015483463.1 | HXXEE domain-containing protein | - |
| GFX43_RS08740 (GFX43_008740) | yrkL | 1701486..1702010 (+) | 525 | WP_015384155.1 | NAD(P)H-dependent oxidoreductase | - |
| GFX43_RS08745 (GFX43_008745) | - | 1702467..1702589 (+) | 123 | WP_015483462.1 | hypothetical protein | - |
| GFX43_RS08750 (GFX43_008750) | - | 1702586..1702711 (+) | 126 | Protein_1692 | recombinase | - |
| GFX43_RS08755 (GFX43_008755) | - | 1702759..1703132 (-) | 374 | Protein_1693 | sigma-70 family RNA polymerase sigma factor | - |
Sequence
Protein
Download Length: 375 a.a. Molecular weight: 44180.37 Da Isoelectric Point: 5.6714
>NTDB_id=352362 GFX43_RS08715 WP_015483467.1 1697518..1698645(+) (rapC) [Bacillus subtilis strain ZD01]
MNLVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALELSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLKALYVDAVDQQGVNQTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF
MNLVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALELSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLKALYVDAVDQQGVNQTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF
Nucleotide
Download Length: 1128 bp
>NTDB_id=352362 GFX43_RS08715 WP_015483467.1 1697518..1698645(+) (rapC) [Bacillus subtilis strain ZD01]
GTGAATCTGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCCTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACAACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTATTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCAGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCATTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAGAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAAAGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATCAAACAATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA
GTGAATCTGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCCTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACAACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTATTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCAGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCATTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAGAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAAAGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATCAAACAATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
44.415 |
100 |
0.445 |
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
39.683 |
100 |
0.4 |