Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   GFX43_RS06690 Genome accession   NZ_CP046448
Coordinates   1297634..1298329 (+) Length   231 a.a.
NCBI ID   WP_015483587.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1292634..1303329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS06665 (GFX43_006665) ytrB 1292662..1293540 (+) 879 WP_004398506.1 ABC transporter ATP-binding protein YtrB -
  GFX43_RS06670 (GFX43_006670) ytrC 1293534..1294520 (+) 987 WP_015483589.1 ABC transporter permease YtrC -
  GFX43_RS06675 (GFX43_006675) ytrD 1294550..1295527 (+) 978 WP_015483588.1 ABC transporter permease YtrD -
  GFX43_RS06680 (GFX43_006680) ytrE 1295542..1296237 (+) 696 WP_003229129.1 ABC transporter ATP-binding protein YtrE -
  GFX43_RS06685 (GFX43_006685) ytrF 1296227..1297537 (+) 1311 WP_015251399.1 ABC transporter permease YtrF -
  GFX43_RS06690 (GFX43_006690) braR 1297634..1298329 (+) 696 WP_015483587.1 two-component response regulator BceR Regulator
  GFX43_RS06695 (GFX43_006695) bceS 1298322..1299326 (+) 1005 WP_015384427.1 two-component sensor histidine kinase BceS -
  GFX43_RS06700 (GFX43_006700) bceA 1299428..1300189 (+) 762 WP_003229137.1 bacitracin ABC transporter ATP-binding protein BceA -
  GFX43_RS06705 (GFX43_006705) bceB 1300179..1302119 (+) 1941 WP_015384426.1 bacitracin ABC transporter permease BceB -
  GFX43_RS06710 (GFX43_006710) yttA 1302156..1302902 (-) 747 WP_015483586.1 LMBR1 domain-containing protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26921.82 Da        Isoelectric Point: 5.3731

>NTDB_id=352345 GFX43_RS06690 WP_015483587.1 1297634..1298329(+) (braR) [Bacillus subtilis strain ZD01]
MFKLLLIEDDESLFHEIKDRLTGWSYDVYGIQDFSQVLQEFAAVNPDCVIIDVQLPKFDGFHWCRLIRSRSNVPILFLSS
RDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAMFRRVHHYNTEPNTIKTWCGAAVDAEQNLVSNDKGSVELTKNEMFI
LKQLIEQKNKIVSREELIRSLWNDERFVSDNTLTVNVNRLRKKLDVLQLGAYIETKVGQGYIAKEEDKFYD

Nucleotide


Download         Length: 696 bp        

>NTDB_id=352345 GFX43_RS06690 WP_015483587.1 1297634..1298329(+) (braR) [Bacillus subtilis strain ZD01]
TTGTTTAAACTTTTGCTGATTGAAGATGATGAATCGCTGTTTCATGAAATCAAGGATCGTTTAACGGGATGGTCCTATGA
TGTATACGGCATTCAGGATTTCAGTCAGGTGCTGCAGGAATTTGCGGCGGTTAATCCTGATTGTGTCATTATTGATGTAC
AGCTGCCTAAATTTGACGGCTTTCATTGGTGCCGGCTGATCCGCTCCCGGTCAAATGTTCCGATTCTCTTTTTATCCTCC
CGGGATCATCCTGCTGATATGGTGATGTCCATGCAGCTCGGGGCAGATGACTTTATTCAAAAGCCATTTCATTTTGATGT
GCTGATCGCGAAAATCCAAGCGATGTTCCGGCGTGTGCACCATTATAATACGGAGCCGAATACGATTAAAACGTGGTGCG
GCGCTGCTGTAGACGCGGAGCAGAATCTCGTCAGCAATGACAAAGGATCTGTTGAACTGACCAAAAATGAAATGTTCATT
CTAAAACAATTAATAGAGCAAAAAAACAAGATCGTCAGCCGGGAAGAGCTGATCAGAAGCTTGTGGAACGATGAGCGTTT
TGTTAGTGATAATACGCTGACCGTCAATGTCAATCGCCTGCGAAAAAAACTGGACGTCCTGCAGCTTGGTGCATATATCG
AGACAAAGGTGGGCCAGGGCTACATCGCGAAGGAAGAGGACAAGTTCTATGATTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)

Response regulator receiver domain (Response_reg)

(5-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

39.545

95.238

0.377