Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   GFX43_RS04270 Genome accession   NZ_CP046448
Coordinates   830212..830925 (+) Length   237 a.a.
NCBI ID   WP_015384738.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 825212..835925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS04235 (GFX43_004235) rppI 825458..825934 (+) 477 WP_010886622.1 8-oxo-dGTP diphosphatase -
  GFX43_RS04240 (GFX43_004240) rapZ 825959..826846 (+) 888 WP_003243903.1 RNase adapter RapZ -
  GFX43_RS04245 (GFX43_004245) mgfK 826848..827801 (+) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -
  GFX43_RS04250 (GFX43_004250) whiA 827824..828774 (+) 951 WP_003243775.1 DNA-binding protein WhiA -
  GFX43_RS04255 (GFX43_004255) crh 828798..829055 (+) 258 WP_003219835.1 HPr family phosphocarrier protein -
  GFX43_RS04260 (GFX43_004260) yvcN 829056..829820 (+) 765 WP_015384739.1 arylamine N-acetyltransferase -
  GFX43_RS04265 (GFX43_004265) yvzJ 829856..830065 (-) 210 WP_003243327.1 lipoprotein -
  GFX43_RS04270 (GFX43_004270) braR 830212..830925 (+) 714 WP_015384738.1 two-component system response regulator PsdR Regulator
  GFX43_RS04275 (GFX43_004275) psdS 830919..831989 (+) 1071 WP_015483745.1 two-component sensor histidine kinase PsdS -
  GFX43_RS04280 (GFX43_004280) psdA 832072..832851 (+) 780 WP_003228167.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  GFX43_RS04285 (GFX43_004285) psdB 832826..834766 (+) 1941 WP_015483744.1 lantibiotic ABC transporter permease PsdB -
  GFX43_RS04290 (GFX43_004290) ghrB 834803..835780 (-) 978 WP_080030695.1 D-glycerate dehydrogenase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27529.40 Da        Isoelectric Point: 4.6774

>NTDB_id=352335 GFX43_RS04270 WP_015384738.1 830212..830925(+) (braR) [Bacillus subtilis strain ZD01]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSSRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLKDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=352335 GFX43_RS04270 WP_015384738.1 830212..830925(+) (braR) [Bacillus subtilis strain ZD01]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGATTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTGGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATATTCGCCCTCTTTGCCGCAGGAATCTAGAATAG
TGGAGCTTGGTGGGCTGACGATTTATCCTGATCAAAATGAGGCCGAATGGAACAGCTCCCGTATTCTGTTTTCCCAAAAA
GAATTTCAGCTTCTCTCTATTTTTGTGAGGGAGCATAAAAAAATTGTTTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAACCGGCTGCGGAGAAAACTGGAGAATGCCGGACTGA
AAGATTGCATTTCCACAATCAGAGGACAAGGCTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAGTGTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.536

94.515

0.43

Multiple sequence alignment