Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GFX43_RS01335 Genome accession   NZ_CP046448
Coordinates   228040..228834 (+) Length   264 a.a.
NCBI ID   WP_015483958.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 223040..233834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS01315 (GFX43_001315) walR 223282..223989 (+) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -
  GFX43_RS01320 (GFX43_001320) walK 223997..225832 (+) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  GFX43_RS01325 (GFX43_001325) walH 225822..227189 (+) 1368 WP_041518280.1 WalRK two-component regulatory system regulator WalH -
  GFX43_RS01330 (GFX43_001330) walI 227176..228018 (+) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  GFX43_RS01335 (GFX43_001335) vicX 228040..228834 (+) 795 WP_015483958.1 MBL fold metallo-hydrolase Regulator
  GFX43_RS01340 (GFX43_001340) htrA 228916..230118 (+) 1203 WP_021481077.1 serine protease HtrC Regulator
  GFX43_RS01345 (GFX43_001345) - 230138..230264 (+) 127 Protein_236 hypothetical protein -
  GFX43_RS01350 (GFX43_001350) - 230380..230565 (+) 186 Protein_237 ATP-binding protein -
  GFX43_RS01355 (GFX43_001355) rocR 230547..231932 (-) 1386 WP_015385164.1 arginine utilization regulatory protein RocR -
  GFX43_RS01360 (GFX43_001360) rocD 232173..233378 (+) 1206 WP_015483955.1 ornithine aminotransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29282.29 Da        Isoelectric Point: 6.0287

>NTDB_id=352318 GFX43_RS01335 WP_015483958.1 228040..228834(+) (vicX) [Bacillus subtilis strain ZD01]
MSLQFSVLASGSTGNAFYLETENHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=352318 GFX43_RS01335 WP_015483958.1 228040..228834(+) (vicX) [Bacillus subtilis strain ZD01]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGAATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAGAC
GGTGAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTTTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGAAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAATAACATGAAGGAGCTGGCAAGAATGTCCGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACAGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53