Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E3Z29_RS27385 Genome accession   NZ_CP038207
Coordinates   5897338..5898705 (-) Length   455 a.a.
NCBI ID   WP_134787373.1    Uniprot ID   -
Organism   Pseudomonas sp. S150     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5892338..5903705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3Z29_RS27360 (E3Z29_27360) - 5892430..5893140 (+) 711 WP_134787372.1 GntR family transcriptional regulator -
  E3Z29_RS27365 (E3Z29_27365) yjiA 5893257..5894228 (-) 972 WP_098965713.1 GTPase -
  E3Z29_RS27370 (E3Z29_27370) - 5894381..5894578 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  E3Z29_RS27375 (E3Z29_27375) - 5894594..5896660 (-) 2067 WP_007963766.1 carbon starvation CstA family protein -
  E3Z29_RS27380 (E3Z29_27380) - 5896820..5897188 (+) 369 WP_098965715.1 PilZ domain-containing protein -
  E3Z29_RS27385 (E3Z29_27385) radA 5897338..5898705 (-) 1368 WP_134787373.1 DNA repair protein RadA Machinery gene
  E3Z29_RS27390 (E3Z29_27390) - 5898749..5899285 (-) 537 WP_098965717.1 ankyrin repeat domain-containing protein -
  E3Z29_RS27395 (E3Z29_27395) katB 5899346..5900887 (-) 1542 WP_098965718.1 catalase KatB -
  E3Z29_RS27400 (E3Z29_27400) mscL 5901173..5901586 (+) 414 WP_027612841.1 large-conductance mechanosensitive channel protein MscL -
  E3Z29_RS27405 (E3Z29_27405) - 5901629..5902405 (-) 777 WP_027612842.1 ferredoxin--NADP reductase -
  E3Z29_RS27410 (E3Z29_27410) - 5902736..5903464 (+) 729 WP_098965721.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48761.24 Da        Isoelectric Point: 6.8987

>NTDB_id=352313 E3Z29_RS27385 WP_134787373.1 5897338..5898705(-) (radA) [Pseudomonas sp. S150]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPTGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPTGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=352313 E3Z29_RS27385 WP_134787373.1 5897338..5898705(-) (radA) [Pseudomonas sp. S150]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCAGGCCAGTGCGGCGAGTG
CGGCGCCTGGAACACCCTGACCGAAACCATGATCGAAAGCGGCGGGGCCACGGCGCCCACCGGGCGTACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCATCGAGGAGATTCCGCGCTTCTCCACCGCGTCCGGTGAGCTG
GATCGGGTTTTGGGTGGCGGTCTGGTCGACGGCTCGGTGGTGCTGATCGGTGGTGACCCGGGCATCGGCAAGTCGACGAT
TCTGTTACAGACCCTGTGCAACCTCGCCAAGAGCATGCCAGCGCTGTACGTCACCGGCGAAGAATCCCAGCAGCAGGTGG
CGATGCGCGCCCGGCGTCTGGGGTTGCCCCAGGATCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACCGCCCGTCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACCATTTTCACCGAACAATTGCAGTCGGCCCC
CGGCGGCGTGTCGCAGGTACGCGAGAGCGCGGCGCTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATTTTCCTCG
TTGGTCACGTTACCAAGGAAGGCGCGCTCGCCGGTCCGCGAGTGCTGGAGCACATGGTCGATACCGTGCTGTATTTCGAA
GGCGAATCCGATGGCCGTTTGCGTCTGTTGCGGGCGGTGAAAAACCGTTTCGGTGCGGTCAACGAGCTGGGTGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCGTCGGCGATTTTTCTCACCCGTGCCCAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTTCAGGCGCTGGTGGACGACAGTCATCTGGCC
AATCCGCGCCGCGTGACGTTGGGCCTTGATCAGAACCGATTGGCAATGTTGTTGGCGGTATTGCACCGTCACGGTGGTAT
TCCGACCCACGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTGAAGGTGTTGGAGACAGCATCGGATCTGGCGTTGA
TGGCGGCGGTGATGTCGAGCTTGCGCAACCGGCCATTGCCGCATGATTTGCTGGTGTTTGGTGAAGTCGGTTTGTCCGGC
GAAGTGCGCCCGGTGCCGAGCGGTCAGGAGCGCTTGAAGGAAGCGGCCAAGCATGGCTTCAAACGGGCAATCGTGCCCAA
GGGCAATGCACCGAAAGAGGCGCCGACGGGGTTACAGATCATTGCCGTGACCCGGCTGGAACAGGCGCTCGACGCACTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus mitis NCTC 12261

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464

Multiple sequence alignment