Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   EYQ98_RS19920 Genome accession   NZ_CP038186
Coordinates   3811683..3812372 (-) Length   229 a.a.
NCBI ID   WP_134778802.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MCC 2514     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3806683..3817372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYQ98_RS19885 (EYQ98_19885) - 3806857..3807333 (-) 477 WP_003185711.1 flagellar protein FlgN -
  EYQ98_RS19890 (EYQ98_19890) flgM 3807352..3807618 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  EYQ98_RS19895 (EYQ98_19895) - 3807698..3808117 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  EYQ98_RS19900 (EYQ98_19900) comFC 3808176..3808910 (-) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  EYQ98_RS19905 (EYQ98_19905) - 3808867..3809151 (-) 285 WP_003185718.1 competence protein ComFB -
  EYQ98_RS19910 (EYQ98_19910) comFA 3809206..3810600 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  EYQ98_RS19915 (EYQ98_19915) - 3810721..3811563 (-) 843 WP_003185726.1 DegV family protein -
  EYQ98_RS19920 (EYQ98_19920) degU 3811683..3812372 (-) 690 WP_134778802.1 two-component system response regulator DegU Regulator
  EYQ98_RS19925 (EYQ98_19925) degS 3812454..3813611 (-) 1158 WP_003185733.1 histidine kinase Regulator
  EYQ98_RS19930 (EYQ98_19930) - 3813825..3814463 (+) 639 WP_003185736.1 YigZ family protein -
  EYQ98_RS19935 (EYQ98_19935) - 3814478..3815554 (+) 1077 WP_003185737.1 LCP family protein -
  EYQ98_RS19940 (EYQ98_19940) - 3815639..3816013 (-) 375 WP_003185738.1 hypothetical protein -
  EYQ98_RS19945 (EYQ98_19945) - 3816133..3817197 (-) 1065 WP_003185739.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25800.42 Da        Isoelectric Point: 5.9436

>NTDB_id=352260 EYQ98_RS19920 WP_134778802.1 3811683..3812372(-) (degU) [Bacillus licheniformis strain MCC 2514]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWGEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=352260 EYQ98_RS19920 WP_134778802.1 3811683..3812372(-) (degU) [Bacillus licheniformis strain MCC 2514]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTTGTTA
TCATGGATATTAATATGCCGAATGTGAACGGAGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCCATCCATGATGACGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGGGGCTATCTGCTGAAAGA
AATGGATGCCGATACGCTGATCGAAGCCGTGAAAGTAGTAGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACACACA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAGGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTCACAAGAAGGGAATGCGAGGTACTGCAGATGCTGGCGGATGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTTGTTGTAGCCATTAAAAACGGCTGGGGAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.253

100

0.983

Multiple sequence alignment