Detailed information NTG0352260

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GJV83_RS09175
• Genome accession: NZ_CP046416
• Coordinates: 1896937..1898361 (-)
• Length: 474 a.a.
• NCBI ID: WP_020804141.1
• Uniprot ID: -
• Organism: Escherichia coli strain LZYWN_4
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1891937..1903361

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJV83_RS24320 (GJV83_09160)	yoeI	1892474..1892536 (+)	63	WP_096335043.1	membrane protein YoeI	-
GJV83_RS09160 (GJV83_09165)	plaP	1892526..1893884 (+)	1359	WP_004148994.1	putrescine/proton symporter PlaP	-
GJV83_RS09165 (GJV83_09170)	-	1894067..1894378 (-)	312	WP_002912109.1	helix-turn-helix domain-containing protein	-
GJV83_RS09170 (GJV83_09175)	fusA	1894618..1896720 (+)	2103	WP_020804128.1	elongation factor G	-
GJV83_RS09175 (GJV83_09180)	sbcB	1896937..1898361 (-)	1425	WP_020804141.1	exodeoxyribonuclease I	Machinery gene
GJV83_RS09180 (GJV83_09185)	-	1898542..1899375 (+)	834	Protein_1818	serine hydrolase	-
GJV83_RS09190 (GJV83_09195)	-	1900709..1901041 (+)	333	Protein_1820	serine-type D-Ala-D-Ala carboxypeptidase DacD	-
GJV83_RS09195 (GJV83_09200)	sbmC	1901160..1901633 (+)	474	WP_001105415.1	DNA gyrase inhibitor SbmC	-
GJV83_RS09200 (GJV83_09205)	yeeA	1901831..1902889 (+)	1059	WP_001200891.1	FUSC family protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54045.26 Da
• Isoelectric Point: 4.9673

>NTDB_id=352260 GJV83_RS09175 WP_020804141.1 1896937..1898361(-) (sbcB) [Escherichia coli strain LZYWN_4]
MQDSVNQPGFLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGITPQEALAKGDNE
AAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGIAWPENDEGL
PSFRLEHLTVANGIEHQNAHDAMADVYATIAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARG
NTSLVAPLAWHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPVLAQANTLRPQDAD
RLGISIQGCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFADQ
RIERLLFNYRARNFPGTLDEHEQQRWLEHRRQVFTPAFLQAYADELQMLYQQYADDKEKLAQLKALWQYVQDIV

Nucleotide

• Length: 1425 bp

>NTDB_id=352260 GJV83_RS09175 WP_020804141.1 1896937..1898361(-) (sbcB) [Escherichia coli strain LZYWN_4]
ATGCAAGATAGCGTCAACCAGCCCGGATTTTTATTCCACGATTATGAAACCTTCGGCACCAGCCCTTCCCTCGACCGGCC
GGCGCAGTTCGCCGCCATCCGCACCGACGCGGAGCTGAATGTGCTCGGCGAGCCCGAAGTGTTTTACTGCAAACCCGCTG
ACGATTACCTGCCGCAGCCGCAGGCGGTGATGATCACCGGGATCACGCCGCAGGAAGCGCTGGCCAAAGGGGATAATGAG
GCCGCGTTTGCCCGCCGCATCCACGATCTGTTCACGGTGCCGCAAACCTGTATCGTCGGCTATAACAACGTGCGCTTTGA
TGACGAAGTGACGCGGAATATCTTCTATCGCAACTTCTATGACCCTTATGCCTGGAGCTGGCAGCACGATAACTCGCGCT
GGGATCTGCTCGACGTGATGCGCGCCTGCTATGCCCTGCGCCCGGAAGGGATCGCCTGGCCGGAGAATGACGAGGGTTTG
CCCAGCTTCCGGCTTGAACATCTGACCGTCGCCAACGGTATTGAACACCAGAACGCCCATGACGCGATGGCCGATGTGTA
CGCCACCATCGCCATGGCGAAGCTGGTGAAAACCCGGCAGCCGCGGCTGTTTGATTATCTCTACAGCCACCGCAATAAGC
GCAAGCTGGCGACGCTCATCGACGTGCCGCAGATGAAGCCCCTGGTGCATGTCTCCGGCATGTTTGGCGCCGCGCGCGGC
AACACCAGCCTGGTGGCGCCCCTGGCCTGGCATCCGGAAAACCGCAATGCGGTGATTATGGTCGATCTGGCGGGCGATAT
GGCGCCGCTGCTGGAACTGGATGCCGATGCCCTGCGCGAGCGGCTTTACACCCCGCGCGCCGAGCTTGGCGATCTGCCGG
CGGCGCCGATTAAGCTGGTACATTTAAATAAATGTCCGGTACTGGCCCAGGCCAATACCCTGCGCCCGCAGGATGCCGAC
CGGCTGGGGATCTCTATTCAGGGCTGTCTGGAGAACGCCCAGCTGCTGCGGGCGAATCCGCAGGTGCGGGAGAAAGTGGT
GGCGGTCTATGCCGAAGCCGAGCCGTTCGTGCCGTCCGAAAACGTCGACGCCCAGCTGTACAATGGGTTCTTTAGCGATG
CCGACCGCGCGGCGATGAAAATCGTGCTGGAAACCGAACCGCGCAATCTGCCGGCGCTGGATATCACCTTCGCCGACCAG
CGTATCGAACGCCTGCTGTTTAACTACCGGGCGCGCAACTTCCCCGGCACGCTCGATGAACATGAGCAGCAGCGCTGGTT
AGAGCACCGTCGTCAGGTGTTTACGCCGGCGTTTTTGCAGGCCTATGCCGATGAGCTGCAGATGCTGTATCAGCAGTATG
CGGATGATAAAGAGAAGCTGGCGCAGCTGAAGGCGCTGTGGCAGTACGTGCAGGATATTGTCTGA

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (12-189)

• Exonuclease C-terminal (ExoI_SH3) (211-471)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	55.957	99.156	0.555