Detailed information NTG0352248

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GJV83_RS05205
• Genome accession: NZ_CP046416
• Coordinates: 1075262..1076254 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain LZYWN_4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1070262..1081254

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJV83_RS05175 (GJV83_05180)	ispD	1070323..1071033 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GJV83_RS05180 (GJV83_05185)	ispF	1071033..1071512 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GJV83_RS05185 (GJV83_05190)	truD	1071509..1072558 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
GJV83_RS05190 (GJV83_05195)	surE	1072539..1073300 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GJV83_RS05195 (GJV83_05200)	pcm	1073294..1073920 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GJV83_RS05200 (GJV83_05205)	nlpD	1074105..1075199 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
GJV83_RS05205 (GJV83_05210)	rpoS	1075262..1076254 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GJV83_RS05210 (GJV83_05215)	ygbN	1076348..1077712 (-)	1365	WP_000104459.1	GntP family transporter	-
GJV83_RS05215 (GJV83_05220)	ygbM	1077801..1078577 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
GJV83_RS05220 (GJV83_05225)	ygbL	1078582..1079220 (-)	639	WP_001278994.1	aldolase	-
GJV83_RS05225 (GJV83_05230)	otnK	1079217..1080479 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=352248 GJV83_RS05205 WP_000081550.1 1075262..1076254(+) (rpoS) [Escherichia coli strain LZYWN_4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=352248 GJV83_RS05205 WP_000081550.1 1075262..1076254(+) (rpoS) [Escherichia coli strain LZYWN_4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715