Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   EYQ98_RS14550 Genome accession   NZ_CP038186
Coordinates   2808378..2809007 (-) Length   209 a.a.
NCBI ID   WP_134778774.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MCC 2514     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2803378..2814007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYQ98_RS14525 (EYQ98_14525) rpsT 2803592..2803858 (+) 267 WP_003183682.1 30S ribosomal protein S20 -
  EYQ98_RS14530 (EYQ98_14530) holA 2803920..2804963 (-) 1044 WP_009327866.1 DNA polymerase III subunit delta -
  EYQ98_RS14535 (EYQ98_14535) - 2805193..2805324 (+) 132 WP_003183686.1 YqzM family protein -
  EYQ98_RS14540 (EYQ98_14540) - 2805349..2807736 (-) 2388 WP_009327865.1 DNA internalization-related competence protein ComEC/Rec2 -
  EYQ98_RS14545 (EYQ98_14545) - 2807740..2808309 (-) 570 WP_003183690.1 ComE operon protein 2 -
  EYQ98_RS14550 (EYQ98_14550) comEA 2808378..2809007 (-) 630 WP_134778774.1 helix-hairpin-helix domain-containing protein Machinery gene
  EYQ98_RS14555 (EYQ98_14555) comER 2809091..2809912 (+) 822 WP_003183696.1 late competence protein ComER -
  EYQ98_RS14560 (EYQ98_14560) - 2809982..2810736 (-) 755 Protein_2834 class I SAM-dependent methyltransferase -
  EYQ98_RS14565 (EYQ98_14565) rsfS 2810733..2811089 (-) 357 WP_003183699.1 ribosome silencing factor -
  EYQ98_RS14570 (EYQ98_14570) yqeK 2811103..2811666 (-) 564 WP_003183701.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  EYQ98_RS14575 (EYQ98_14575) - 2811656..2812225 (-) 570 WP_003183702.1 nicotinate-nucleotide adenylyltransferase -
  EYQ98_RS14580 (EYQ98_14580) yhbY 2812244..2812534 (-) 291 WP_003183704.1 ribosome assembly RNA-binding protein YhbY -
  EYQ98_RS14585 (EYQ98_14585) aroE 2812528..2813364 (-) 837 WP_003183706.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22498.45 Da        Isoelectric Point: 5.1890

>NTDB_id=352244 EYQ98_RS14550 WP_134778774.1 2808378..2809007(-) (comEA) [Bacillus licheniformis strain MCC 2514]
MTDWLKQYKWHAAGGVTLVLIISAAFMLLSGKRETSSGLSIPEEASAQTYDKKEEVKREKSAGKEAVIIDLKGAVKNPGV
YQMKEGDRVHDVLKKAGGTEKKADQKQINLAAVLQDGMVVYIPFEGEEAADSFSKAGSRADGASVDIVNINTASSEELQA
IPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFERIKSAITVK

Nucleotide


Download         Length: 630 bp        

>NTDB_id=352244 EYQ98_RS14550 WP_134778774.1 2808378..2809007(-) (comEA) [Bacillus licheniformis strain MCC 2514]
TTGACAGATTGGCTAAAACAATATAAATGGCATGCTGCGGGAGGCGTTACACTCGTCTTGATCATCAGCGCTGCCTTCAT
GCTGTTAAGCGGAAAGCGTGAAACTTCATCCGGCCTCTCCATTCCCGAGGAGGCTTCTGCACAGACGTATGACAAGAAGG
AGGAGGTGAAACGGGAAAAAAGCGCGGGAAAAGAGGCGGTTATCATCGATTTGAAAGGCGCTGTGAAAAATCCGGGCGTC
TATCAAATGAAAGAGGGAGACAGGGTCCACGATGTATTGAAAAAAGCAGGCGGCACCGAGAAAAAAGCGGATCAAAAGCA
AATTAACCTTGCAGCCGTTTTGCAGGACGGTATGGTGGTTTACATTCCATTTGAGGGGGAAGAGGCTGCTGATTCTTTCT
CGAAAGCGGGTTCAAGGGCAGATGGCGCTTCCGTCGATATCGTCAATATCAATACGGCTTCCTCTGAGGAGCTTCAGGCG
ATTCCCGGCATCGGCCCTTCAAAAGCGGAAGCGGTTATCGAATACCGCGAGGAGAACGGACCGTTTCACACGGTAGAAGA
CATAACAAACGTTTCGGGAATTGGAGAAAAGTCTTTTGAAAGAATAAAATCTGCAATCACGGTAAAGTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(69-123)

Helix-hairpin-helix motif (HHH_3)

(147-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

50.481

99.522

0.502

Multiple sequence alignment