Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EYQ98_RS12665 Genome accession   NZ_CP038186
Coordinates   2470128..2470724 (+) Length   198 a.a.
NCBI ID   WP_009328006.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MCC 2514     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2465128..2475724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYQ98_RS12625 (EYQ98_12625) - 2466147..2466653 (-) 507 WP_003182879.1 PTS glucose transporter subunit IIA -
  EYQ98_RS12630 (EYQ98_12630) - 2466829..2467248 (+) 420 WP_003182880.1 hypothetical protein -
  EYQ98_RS12635 (EYQ98_12635) - 2467267..2467710 (-) 444 WP_003182882.1 YppG family protein -
  EYQ98_RS12640 (EYQ98_12640) - 2467889..2468089 (+) 201 WP_011198064.1 YppF family protein -
  EYQ98_RS12645 (EYQ98_12645) - 2468122..2468493 (-) 372 WP_003182887.1 YppE family protein -
  EYQ98_RS12650 (EYQ98_12650) - 2468551..2468778 (-) 228 WP_003182890.1 YppD family protein -
  EYQ98_RS12655 (EYQ98_12655) sspM 2468978..2469082 (+) 105 WP_009328007.1 acid-soluble spore protein SspM -
  EYQ98_RS12660 (EYQ98_12660) - 2469115..2470047 (-) 933 WP_026080760.1 DUF2515 domain-containing protein -
  EYQ98_RS12665 (EYQ98_12665) recU 2470128..2470724 (+) 597 WP_009328006.1 Holliday junction resolvase RecU Machinery gene
  EYQ98_RS12670 (EYQ98_12670) - 2470782..2473469 (+) 2688 WP_009328005.1 penicillin-binding protein 1A -
  EYQ98_RS12675 (EYQ98_12675) - 2473490..2473954 (-) 465 WP_202604373.1 YpoC family protein -
  EYQ98_RS12680 (EYQ98_12680) nth 2473990..2474652 (-) 663 WP_003182903.1 endonuclease III -
  EYQ98_RS12685 (EYQ98_12685) - 2474669..2475367 (-) 699 WP_003182905.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23171.31 Da        Isoelectric Point: 9.3852

>NTDB_id=352234 EYQ98_RS12665 WP_009328006.1 2470128..2470724(+) (recU) [Bacillus licheniformis strain MCC 2514]
MIRYPNGKSYQPKTAASSLQKKPSYSNRGMTLEDDLNETNMYYQSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWERKKQNG
RKSIRKDELQEVAHPISLGYSPRIDYIKIIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=352234 EYQ98_RS12665 WP_009328006.1 2470128..2470724(+) (recU) [Bacillus licheniformis strain MCC 2514]
GTGATTCGTTACCCGAACGGCAAATCCTATCAGCCGAAAACAGCTGCCTCATCCTTGCAAAAGAAGCCGTCGTATTCCAA
TCGCGGCATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTATCAATCTCATTCGATTGCGGTCATCCATAAAA
AACCGACACCTGTACAGATTGTCCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTTATCAAAGAAGCATATTTCAAGCAG
TCGTCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTACATCGATTTTGAAGCGAAAGAAACAAAGAGCCGAACCTC
GTTCCCGCTTCAGAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAGACGGCATTTGTTTTGTTA
TCATATCCGCTTTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGAGCGGAAAAAGCAAAACGGC
AGAAAATCGATCCGAAAAGACGAGCTTCAGGAAGTCGCTCACCCCATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAGATTATTGATCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.833

Multiple sequence alignment