Detailed information NTG0352228

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: EYQ98_RS09965
• Genome accession: NZ_CP038186
• Coordinates: 1954300..1955079 (+)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus licheniformis strain MCC 2514
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1949300..1960079

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EYQ98_RS09945 (EYQ98_09945)	trmFO	1949997..1951301 (+)	1305	WP_003181748.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
EYQ98_RS09950 (EYQ98_09950)	xerC	1951368..1952282 (+)	915	WP_011197974.1	tyrosine recombinase XerC	-
EYQ98_RS09955 (EYQ98_09955)	hslV	1952296..1952841 (+)	546	WP_003181752.1	ATP-dependent protease subunit HslV	-
EYQ98_RS09960 (EYQ98_09960)	hslU	1952849..1954261 (+)	1413	WP_254926368.1	HslU--HslV peptidase ATPase subunit	-
EYQ98_RS09965 (EYQ98_09965)	codY	1954300..1955079 (+)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
EYQ98_RS09970 (EYQ98_09970)	flgB	1955433..1955822 (+)	390	WP_003181758.1	flagellar basal body rod protein FlgB	-
EYQ98_RS09975 (EYQ98_09975)	flgC	1955822..1956274 (+)	453	WP_009328519.1	flagellar basal body rod protein FlgC	-
EYQ98_RS09980 (EYQ98_09980)	fliE	1956288..1956605 (+)	318	WP_003181764.1	flagellar hook-basal body complex protein FliE	-
EYQ98_RS09985 (EYQ98_09985)	fliF	1956656..1958257 (+)	1602	WP_003181766.1	flagellar basal-body MS-ring/collar protein FliF	-
EYQ98_RS09990 (EYQ98_09990)	fliG	1958271..1959287 (+)	1017	WP_003181768.1	flagellar motor switch protein FliG	-
EYQ98_RS09995 (EYQ98_09995)	fliH	1959271..1960038 (+)	768	WP_016885763.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=352228 EYQ98_RS09965 WP_003181756.1 1954300..1955079(+) (codY) [Bacillus licheniformis strain MCC 2514]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=352228 EYQ98_RS09965 WP_003181756.1 1954300..1955079(+) (codY) [Bacillus licheniformis strain MCC 2514]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467