Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GNY17_RS16730 Genome accession   NZ_CP046411
Coordinates   3297972..3298571 (+) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain 19-021-D1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3292972..3303571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNY17_RS28235 (GNY17_16705) - 3294123..3294254 (+) 132 WP_005380608.1 hypothetical protein -
  GNY17_RS16710 (GNY17_16710) - 3294270..3294674 (+) 405 WP_005494429.1 YbaN family protein -
  GNY17_RS16715 (GNY17_16715) apt 3294840..3295385 (+) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  GNY17_RS16720 (GNY17_16720) dnaX 3295394..3297529 (+) 2136 WP_025793052.1 DNA polymerase III subunit gamma/tau -
  GNY17_RS16725 (GNY17_16725) - 3297612..3297941 (+) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  GNY17_RS16730 (GNY17_16730) recR 3297972..3298571 (+) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  GNY17_RS16735 (GNY17_16735) aqpZ 3298623..3299321 (-) 699 WP_005460095.1 aquaporin Z -
  GNY17_RS16740 (GNY17_16740) - 3299528..3300787 (-) 1260 WP_033904960.1 aromatic amino acid transport family protein -
  GNY17_RS16745 (GNY17_16745) - 3301105..3301485 (+) 381 WP_005494433.1 RidA family protein -
  GNY17_RS16750 (GNY17_16750) - 3301501..3302778 (+) 1278 WP_025793056.1 serine dehydratase subunit alpha family protein -
  GNY17_RS16755 (GNY17_16755) - 3302807..3303466 (+) 660 WP_005397228.1 transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=352215 GNY17_RS16730 WP_005460088.1 3297972..3298571(+) (recR) [Vibrio parahaemolyticus strain 19-021-D1]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=352215 GNY17_RS16730 WP_005460088.1 3297972..3298571(+) (recR) [Vibrio parahaemolyticus strain 19-021-D1]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTTGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTCGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432

Multiple sequence alignment