Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GNY17_RS12210 | Genome accession | NZ_CP046411 |
| Coordinates | 2382457..2383656 (+) | Length | 399 a.a. |
| NCBI ID | WP_156216677.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain 19-021-D1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2377457..2388656
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GNY17_RS12165 (GNY17_12160) | - | 2377758..2378087 (-) | 330 | WP_015297474.1 | DUF2500 domain-containing protein | - |
| GNY17_RS12170 (GNY17_12165) | - | 2378329..2378697 (+) | 369 | WP_005489749.1 | hypothetical protein | - |
| GNY17_RS27875 | - | 2378760..2378939 (-) | 180 | WP_033905002.1 | hypothetical protein | - |
| GNY17_RS12185 (GNY17_12180) | - | 2379673..2380293 (+) | 621 | WP_005481960.1 | lysoplasmalogenase | - |
| GNY17_RS12190 (GNY17_12185) | - | 2380363..2380584 (+) | 222 | WP_015297472.1 | YecH family metal-binding protein | - |
| GNY17_RS12195 (GNY17_12190) | - | 2380704..2381288 (+) | 585 | WP_005455144.1 | YhgN family NAAT transporter | - |
| GNY17_RS12200 (GNY17_12195) | - | 2381342..2381608 (-) | 267 | WP_005496405.1 | DUF1145 domain-containing protein | - |
| GNY17_RS12205 (GNY17_12200) | rsmD | 2381634..2382233 (-) | 600 | WP_005455148.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| GNY17_RS12210 (GNY17_12205) | pilA | 2382457..2383656 (+) | 1200 | WP_156216677.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| GNY17_RS12215 (GNY17_12210) | ftsE | 2383679..2384353 (+) | 675 | WP_005481953.1 | cell division ATP-binding protein FtsE | - |
| GNY17_RS12220 (GNY17_12215) | ftsX | 2384343..2385311 (+) | 969 | WP_005481956.1 | permease-like cell division protein FtsX | - |
| GNY17_RS12225 (GNY17_12220) | rpoH | 2385487..2386347 (+) | 861 | WP_005490420.1 | RNA polymerase sigma factor RpoH | - |
| GNY17_RS12230 (GNY17_12225) | glpE | 2386839..2387159 (+) | 321 | WP_005460380.1 | thiosulfate sulfurtransferase GlpE | - |
| GNY17_RS12235 (GNY17_12230) | glpG | 2387159..2388001 (+) | 843 | WP_025510242.1 | rhomboid family intramembrane serine protease GlpG | - |
| GNY17_RS12240 (GNY17_12235) | - | 2388061..2388471 (-) | 411 | WP_005460376.1 | flagellar basal body-associated protein FliL | - |
Sequence
Protein
Download Length: 399 a.a. Molecular weight: 43482.10 Da Isoelectric Point: 4.3548
>NTDB_id=352185 GNY17_RS12210 WP_156216677.1 2382457..2383656(+) (pilA) [Vibrio parahaemolyticus strain 19-021-D1]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAETAPAEAEAEAEGPQV
PVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKIINNLTEKASRG
DLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVE
QLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLT
LDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFETQEFIDALFSREE
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAETAPAEAEAEAEGPQV
PVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKIINNLTEKASRG
DLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVE
QLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLT
LDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFETQEFIDALFSREE
Nucleotide
Download Length: 1200 bp
>NTDB_id=352185 GNY17_RS12210 WP_156216677.1 2382457..2383656(+) (pilA) [Vibrio parahaemolyticus strain 19-021-D1]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAACAGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGACTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGGGCCACAAGTA
CCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTCTTCGCTCGCCTTAAACGCAGCCTTAGCCGTAC
GAAAGCAAACATCGGTGCTGGTTTCTTTGGTCTGTTCAGCGGTAAAAAAATCGATGACGACCTATTTGAAGAGCTAGAAG
AGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAAATCATCAACAACCTGACAGAAAAAGCCTCTCGTGGT
GATCTGAAAGATGGCGAAGCCCTTTATGGCCTGCTGAAAGAAGAAATGGCGGAGATTTTATCTAAAGTAGAACAGCCTCT
AGAGATCGACAGCAGCAAAACACCTTACGTCATCTTGATGGTTGGTGTGAATGGTGTGGGTAAAACCACCACCATCGGTA
AACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCGGCTGGCGATACTTTCCGAGCGGCTGCAGTTGAG
CAGCTGCAAGTGTGGGGCGAACGTAACAATGTTCCTGTGATCGCGCAGCATACTGGCGCAGACAGCGCATCGGTTATCTA
CGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCGATACGGCGGGTCGTCTACAAAACAAAGCCA
ACCTAATGGAAGAGCTACGCAAGATTGTGCGTGTGATGAAGAAAATTGATGATTCTGCACCACATGAAATCATGCTGACG
CTGGATGCAGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAGTGATGTAGCTCCTCTAACCGGGATTACATT
GACTAAGCTGGATGGTACAGCGAAAGGCGGCGTTATTTTCGCTATCGCTGATCAGTTTGGTATTCCAATTCGCTACATTG
GTGTTGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTTATCGACGCTTTGTTTAGCCGTGAAGAGTAA
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAACAGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGACTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGGGCCACAAGTA
CCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTCTTCGCTCGCCTTAAACGCAGCCTTAGCCGTAC
GAAAGCAAACATCGGTGCTGGTTTCTTTGGTCTGTTCAGCGGTAAAAAAATCGATGACGACCTATTTGAAGAGCTAGAAG
AGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAAATCATCAACAACCTGACAGAAAAAGCCTCTCGTGGT
GATCTGAAAGATGGCGAAGCCCTTTATGGCCTGCTGAAAGAAGAAATGGCGGAGATTTTATCTAAAGTAGAACAGCCTCT
AGAGATCGACAGCAGCAAAACACCTTACGTCATCTTGATGGTTGGTGTGAATGGTGTGGGTAAAACCACCACCATCGGTA
AACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCGGCTGGCGATACTTTCCGAGCGGCTGCAGTTGAG
CAGCTGCAAGTGTGGGGCGAACGTAACAATGTTCCTGTGATCGCGCAGCATACTGGCGCAGACAGCGCATCGGTTATCTA
CGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCGATACGGCGGGTCGTCTACAAAACAAAGCCA
ACCTAATGGAAGAGCTACGCAAGATTGTGCGTGTGATGAAGAAAATTGATGATTCTGCACCACATGAAATCATGCTGACG
CTGGATGCAGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAGTGATGTAGCTCCTCTAACCGGGATTACATT
GACTAAGCTGGATGGTACAGCGAAAGGCGGCGTTATTTTCGCTATCGCTGATCAGTTTGGTATTCCAATTCGCTACATTG
GTGTTGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTTATCGACGCTTTGTTTAGCCGTGAAGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
50.82 |
91.729 |
0.466 |