Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   GNY17_RS11690 Genome accession   NZ_CP046411
Coordinates   2274512..2274724 (+) Length   70 a.a.
NCBI ID   WP_033929743.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 19-021-D1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2269512..2279724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNY17_RS11655 (GNY17_11650) - 2269759..2271102 (+) 1344 WP_156216666.1 tyrosine-type recombinase/integrase -
  GNY17_RS11660 (GNY17_11655) - 2271095..2271478 (+) 384 WP_156216668.1 hypothetical protein -
  GNY17_RS11665 (GNY17_11660) - 2271488..2271676 (+) 189 WP_000342585.1 hypothetical protein -
  GNY17_RS11670 (GNY17_11665) - 2271938..2272342 (+) 405 WP_000127617.1 DUF6088 family protein -
  GNY17_RS11675 (GNY17_11670) - 2272345..2273286 (+) 942 WP_156216669.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  GNY17_RS11680 (GNY17_11675) - 2273295..2273861 (+) 567 Protein_2076 type I restriction-modification system subunit M N-terminal domain-containing protein -
  GNY17_RS11685 (GNY17_11680) - 2273933..2274208 (-) 276 WP_156216623.1 hypothetical protein -
  GNY17_RS11690 (GNY17_11685) sinR 2274512..2274724 (+) 213 WP_033929743.1 helix-turn-helix domain-containing protein Regulator
  GNY17_RS11695 (GNY17_11690) - 2274763..2275875 (-) 1113 WP_156216625.1 hypothetical protein -
  GNY17_RS11700 (GNY17_11695) - 2275875..2276471 (-) 597 WP_107111805.1 pancortin-3 -
  GNY17_RS11705 (GNY17_11700) - 2276497..2277246 (-) 750 WP_156216627.1 M48 family metallopeptidase -

Sequence

Protein


Download         Length: 70 a.a.        Molecular weight: 7903.03 Da        Isoelectric Point: 7.0105

>NTDB_id=352181 GNY17_RS11690 WP_033929743.1 2274512..2274724(+) (sinR) [Vibrio parahaemolyticus strain 19-021-D1]
MKDPRLVAFGERVRQIRKEKGLSQEALADLAGIDRSYMGHIERGDQNITLTKIYQISEALRVSVSDLISD

Nucleotide


Download         Length: 213 bp        

>NTDB_id=352181 GNY17_RS11690 WP_033929743.1 2274512..2274724(+) (sinR) [Vibrio parahaemolyticus strain 19-021-D1]
ATGAAAGATCCACGTTTAGTCGCATTTGGGGAAAGAGTGCGTCAGATAAGAAAAGAAAAAGGGCTGTCGCAGGAAGCCTT
GGCCGATCTAGCAGGGATCGACCGGAGTTATATGGGGCATATTGAACGCGGTGATCAGAACATTACACTCACTAAAATCT
ATCAGATATCTGAAGCTTTAAGGGTGTCAGTTTCAGATTTGATTTCTGACTAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(13-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

41.935

88.571

0.371