Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3306_RS05200 | Genome accession | NZ_CP038183 |
| Coordinates | 1075822..1076292 (+) | Length | 156 a.a. |
| NCBI ID | WP_029549393.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain MJ015 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1065757..1107871 | 1075822..1076292 | within | 0 |
Gene organization within MGE regions
Location: 1065757..1107871
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3306_RS05125 (E3306_05360) | - | 1065757..1067142 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| E3306_RS05130 (E3306_05365) | - | 1067200..1068129 (-) | 930 | WP_001253415.1 | DUF5067 domain-containing protein | - |
| E3306_RS05135 (E3306_05370) | - | 1068147..1068608 (-) | 462 | WP_000525004.1 | hypothetical protein | - |
| E3306_RS05140 (E3306_05375) | - | 1068621..1068935 (-) | 315 | WP_000333630.1 | helix-turn-helix domain-containing protein | - |
| E3306_RS05145 (E3306_05380) | - | 1069087..1069323 (+) | 237 | WP_001121027.1 | helix-turn-helix transcriptional regulator | - |
| E3306_RS05150 (E3306_05385) | - | 1069337..1070113 (+) | 777 | WP_031783556.1 | Rha family transcriptional regulator | - |
| E3306_RS05155 | - | 1070142..1070309 (+) | 168 | WP_162852001.1 | hypothetical protein | - |
| E3306_RS05160 (E3306_05390) | - | 1070360..1070842 (-) | 483 | WP_033858402.1 | hypothetical protein | - |
| E3306_RS05165 (E3306_05395) | - | 1071052..1071282 (-) | 231 | WP_000395457.1 | hypothetical protein | - |
| E3306_RS14145 | - | 1071341..1071469 (+) | 129 | WP_001559112.1 | hypothetical protein | - |
| E3306_RS05170 (E3306_05400) | - | 1071462..1071623 (+) | 162 | WP_000066026.1 | DUF1270 family protein | - |
| E3306_RS05175 (E3306_05405) | - | 1071717..1071977 (+) | 261 | WP_064127680.1 | DUF1108 family protein | - |
| E3306_RS05180 (E3306_05410) | - | 1071986..1072249 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3306_RS05185 (E3306_05415) | - | 1072258..1074201 (+) | 1944 | WP_168367621.1 | AAA family ATPase | - |
| E3306_RS05190 (E3306_05420) | - | 1074203..1075123 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| E3306_RS05195 (E3306_05425) | - | 1075204..1075821 (+) | 618 | WP_072528355.1 | MBL fold metallo-hydrolase | - |
| E3306_RS05200 (E3306_05430) | ssbA | 1075822..1076292 (+) | 471 | WP_029549393.1 | single-stranded DNA-binding protein | Machinery gene |
| E3306_RS05205 (E3306_05435) | - | 1076322..1077206 (+) | 885 | WP_031833239.1 | DnaD domain protein | - |
| E3306_RS05210 (E3306_05440) | - | 1077213..1077431 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| E3306_RS05215 (E3306_05445) | - | 1077440..1077844 (+) | 405 | WP_000401972.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3306_RS05220 (E3306_05450) | - | 1077857..1078225 (+) | 369 | WP_076692367.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3306_RS05225 (E3306_05455) | - | 1078229..1078471 (+) | 243 | WP_000131382.1 | SAV1978 family virulence-associated passenger protein | - |
| E3306_RS05230 (E3306_05460) | - | 1078486..1078770 (+) | 285 | WP_173950593.1 | hypothetical protein | - |
| E3306_RS05235 (E3306_05465) | - | 1078763..1079011 (+) | 249 | WP_001065083.1 | DUF1024 family protein | - |
| E3306_RS05240 (E3306_05470) | - | 1079004..1079534 (+) | 531 | WP_000185666.1 | dUTPase | - |
| E3306_RS05245 (E3306_05475) | - | 1079571..1079816 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| E3306_RS05250 (E3306_05480) | - | 1079813..1080019 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| E3306_RS05255 (E3306_05485) | - | 1080016..1080402 (+) | 387 | WP_031807105.1 | phage protein | - |
| E3306_RS05260 (E3306_05490) | - | 1080399..1080572 (+) | 174 | WP_000595302.1 | transcriptional activator RinB | - |
| E3306_RS05265 (E3306_05495) | - | 1080573..1080974 (+) | 402 | WP_000286968.1 | hypothetical protein | - |
| E3306_RS05270 (E3306_05505) | - | 1081320..1081808 (+) | 489 | WP_031904528.1 | terminase small subunit | - |
| E3306_RS05275 (E3306_05510) | - | 1081792..1083057 (+) | 1266 | WP_108943820.1 | PBSX family phage terminase large subunit | - |
| E3306_RS05280 (E3306_05515) | - | 1083076..1084482 (+) | 1407 | WP_031886702.1 | phage portal protein | - |
| E3306_RS05285 (E3306_05520) | - | 1084421..1085401 (+) | 981 | WP_049949321.1 | phage head morphogenesis protein | - |
| E3306_RS05290 (E3306_05525) | - | 1085499..1086095 (+) | 597 | WP_015967248.1 | phage scaffolding protein | - |
| E3306_RS05295 (E3306_05530) | - | 1086116..1086940 (+) | 825 | WP_023180143.1 | N4-gp56 family major capsid protein | - |
| E3306_RS05300 (E3306_05535) | - | 1086957..1087283 (+) | 327 | WP_173950594.1 | Rho termination factor N-terminal domain-containing protein | - |
| E3306_RS05305 (E3306_05540) | - | 1087283..1087597 (+) | 315 | WP_000338934.1 | phage head-tail connector protein | - |
| E3306_RS05310 (E3306_05545) | - | 1087590..1087925 (+) | 336 | WP_000482988.1 | phage head closure protein | - |
| E3306_RS05315 (E3306_05550) | - | 1087912..1088325 (+) | 414 | WP_173950595.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| E3306_RS05320 (E3306_05555) | - | 1088338..1088775 (+) | 438 | WP_000270196.1 | DUF3168 domain-containing protein | - |
| E3306_RS05325 (E3306_05560) | - | 1088762..1089322 (+) | 561 | WP_000046067.1 | hypothetical protein | - |
| E3306_RS05330 (E3306_05565) | - | 1089384..1089878 (+) | 495 | WP_000141084.1 | tail assembly chaperone | - |
| E3306_RS05335 (E3306_05570) | - | 1089899..1090240 (+) | 342 | WP_000204079.1 | hypothetical protein | - |
| E3306_RS05340 (E3306_05575) | - | 1090300..1093386 (+) | 3087 | WP_234100648.1 | terminase | - |
| E3306_RS05345 (E3306_05580) | - | 1093401..1094336 (+) | 936 | WP_000560198.1 | phage tail domain-containing protein | - |
| E3306_RS05350 (E3306_05585) | - | 1094347..1096233 (+) | 1887 | WP_113613160.1 | SGNH/GDSL hydrolase family protein | - |
| E3306_RS05355 (E3306_05590) | - | 1096246..1098144 (+) | 1899 | WP_072464659.1 | hypothetical protein | - |
| E3306_RS05360 (E3306_05595) | - | 1098144..1099967 (+) | 1824 | WP_113613161.1 | phage baseplate upper protein | - |
| E3306_RS05365 (E3306_05600) | - | 1099967..1100344 (+) | 378 | WP_000705909.1 | DUF2977 domain-containing protein | - |
| E3306_RS05370 (E3306_05605) | - | 1100348..1100521 (+) | 174 | WP_001790193.1 | XkdX family protein | - |
| E3306_RS05375 (E3306_05610) | - | 1100562..1100861 (+) | 300 | WP_000466769.1 | DUF2951 domain-containing protein | - |
| E3306_RS05380 (E3306_05615) | - | 1100998..1102872 (+) | 1875 | WP_029265300.1 | glucosaminidase domain-containing protein | - |
| E3306_RS05385 (E3306_05620) | - | 1102885..1104123 (+) | 1239 | WP_064282041.1 | BppU family phage baseplate upper protein | - |
| E3306_RS05390 (E3306_05625) | - | 1104128..1104523 (+) | 396 | WP_000398878.1 | hypothetical protein | - |
| E3306_RS05395 (E3306_05630) | - | 1104579..1105016 (+) | 438 | WP_001556691.1 | phage holin | - |
| E3306_RS05400 (E3306_05635) | - | 1104997..1106442 (+) | 1446 | WP_173950597.1 | SH3 domain-containing protein | - |
| E3306_RS05405 (E3306_05640) | - | 1106832..1107419 (+) | 588 | WP_000448197.1 | hypothetical protein | - |
| E3306_RS05410 (E3306_05645) | - | 1107416..1107871 (+) | 456 | WP_000971220.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17654.38 Da Isoelectric Point: 4.6228
>NTDB_id=352163 E3306_RS05200 WP_029549393.1 1075822..1076292(+) (ssbA) [Staphylococcus aureus strain MJ015]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=352163 E3306_RS05200 WP_029549393.1 1075822..1076292(+) (ssbA) [Staphylococcus aureus strain MJ015]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.017 |
100 |
0.692 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.571 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |