Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   GNY17_RS09220 Genome accession   NZ_CP046411
Coordinates   1793401..1793613 (+) Length   70 a.a.
NCBI ID   WP_033929743.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 19-021-D1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1788401..1798613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNY17_RS09180 (GNY17_09175) - 1789595..1790257 (-) 663 WP_025792643.1 DNA-methyltransferase -
  GNY17_RS09190 (GNY17_09185) - 1790931..1791296 (-) 366 WP_011105650.1 translation elongation factor Ts -
  GNY17_RS09195 (GNY17_09190) - 1791373..1791522 (+) 150 WP_005480562.1 hypothetical protein -
  GNY17_RS09205 (GNY17_09200) - 1791691..1792089 (-) 399 WP_025506819.1 hypothetical protein -
  GNY17_RS09210 (GNY17_09205) - 1792253..1792750 (+) 498 Protein_1627 type I restriction-modification system subunit M N-terminal domain-containing protein -
  GNY17_RS09215 (GNY17_09210) - 1792822..1793097 (-) 276 WP_156216623.1 hypothetical protein -
  GNY17_RS09220 (GNY17_09215) sinR 1793401..1793613 (+) 213 WP_033929743.1 helix-turn-helix domain-containing protein Regulator
  GNY17_RS09225 (GNY17_09220) - 1793652..1794764 (-) 1113 WP_156216625.1 hypothetical protein -
  GNY17_RS09230 (GNY17_09225) - 1794764..1795360 (-) 597 WP_107111805.1 pancortin-3 -
  GNY17_RS09235 (GNY17_09230) - 1795386..1796135 (-) 750 WP_156216627.1 M48 family metallopeptidase -

Sequence

Protein


Download         Length: 70 a.a.        Molecular weight: 7903.03 Da        Isoelectric Point: 7.0105

>NTDB_id=352163 GNY17_RS09220 WP_033929743.1 1793401..1793613(+) (sinR) [Vibrio parahaemolyticus strain 19-021-D1]
MKDPRLVAFGERVRQIRKEKGLSQEALADLAGIDRSYMGHIERGDQNITLTKIYQISEALRVSVSDLISD

Nucleotide


Download         Length: 213 bp        

>NTDB_id=352163 GNY17_RS09220 WP_033929743.1 1793401..1793613(+) (sinR) [Vibrio parahaemolyticus strain 19-021-D1]
ATGAAAGATCCACGTTTAGTCGCATTTGGGGAAAGAGTGCGTCAGATAAGAAAAGAAAAAGGGCTGTCGCAGGAAGCCTT
GGCCGATCTAGCAGGGATCGACCGGAGTTATATGGGGCATATTGAACGCGGTGATCAGAACATTACACTCACTAAAATCT
ATCAGATATCTGAAGCTTTAAGGGTGTCAGTTTCAGATTTGATTTCTGACTAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(13-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

41.935

88.571

0.371

Multiple sequence alignment