Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GNY17_RS03990 Genome accession   NZ_CP046411
Coordinates   692649..693629 (+) Length   326 a.a.
NCBI ID   WP_025792170.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 19-021-D1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 687649..698629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNY17_RS03970 (GNY17_03965) - 688006..689616 (+) 1611 WP_025792172.1 peptide ABC transporter substrate-binding protein -
  GNY17_RS03975 (GNY17_03970) oppB 689783..690703 (+) 921 WP_021823269.1 oligopeptide ABC transporter permease OppB -
  GNY17_RS03980 (GNY17_03975) - 690713..691645 (+) 933 WP_015296632.1 ABC transporter permease subunit -
  GNY17_RS03985 (GNY17_03980) - 691656..692639 (+) 984 WP_025792171.1 ABC transporter ATP-binding protein -
  GNY17_RS03990 (GNY17_03985) amiE 692649..693629 (+) 981 WP_025792170.1 ABC transporter ATP-binding protein Regulator
  GNY17_RS03995 (GNY17_03990) - 693639..695435 (+) 1797 WP_025792169.1 aminopeptidase P family protein -
  GNY17_RS04005 (GNY17_04000) - 695688..698132 (-) 2445 WP_025792168.1 collagenase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36419.25 Da        Isoelectric Point: 8.4948

>NTDB_id=352138 GNY17_RS03990 WP_025792170.1 692649..693629(+) (amiE) [Vibrio parahaemolyticus strain 19-021-D1]
MNQKEVLLSARELQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMRGFSKNKLARRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATQLCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide


Download         Length: 981 bp        

>NTDB_id=352138 GNY17_RS03990 WP_025792170.1 692649..693629(+) (amiE) [Vibrio parahaemolyticus strain 19-021-D1]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGAACTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATCGAGGCGAAACCCTTGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCGCGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGTAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAGCGCGTCGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAACCTCAACTCAAACGCGCCGAAG
TCGAAAAACGCGTCATTGCGATGATGGACAAAGTGGGTCTGCTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGCGCCTTAATCCTCAATCCGGACTTAGTGGTGTGTGATGAACCCGTCAG
CGCATTGGATGTTTCGATTCAAGCGCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCTCATGACCTAAGCGTTGTGCGTCATATCAGCGACCGAGTGATGGTGATGTACCTTGGCAAACCAATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAAGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCCTCTCCGCTCAACCCACCAAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGCAACTATGTGGGCAGCAAAGCCCAGTCAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-305)

ABC transporter (ABC_tran)

(35-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.514

95.399

0.386
  amiE Streptococcus thermophilus LMD-9

40.514

95.399

0.386
  amiE Streptococcus salivarius strain HSISS4

39.744

95.706

0.38
  amiF Streptococcus salivarius strain HSISS4

45.091

84.356

0.38
  amiF Streptococcus thermophilus LMG 18311

45.055

83.742

0.377
  amiF Streptococcus thermophilus LMD-9

45.055

83.742

0.377
  oppD Streptococcus mutans UA159

38.339

96.012

0.368