Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GNT62_RS12780 Genome accession   NZ_CP046406
Coordinates   2640807..2641403 (+) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain SE5458     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2635807..2646403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNT62_RS12755 (GNT62_12715) - 2636741..2637118 (+) 378 WP_003083354.1 hypothetical protein -
  GNT62_RS12765 (GNT62_12725) - 2637372..2638238 (-) 867 WP_023657576.1 ABC transporter substrate-binding protein -
  GNT62_RS12770 (GNT62_12730) dnaX 2638275..2640356 (+) 2082 WP_031691677.1 DNA polymerase III subunit gamma/tau -
  GNT62_RS12775 (GNT62_12735) - 2640402..2640728 (+) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  GNT62_RS12780 (GNT62_12740) recR 2640807..2641403 (+) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  GNT62_RS12785 (GNT62_12745) - 2641526..2642674 (+) 1149 WP_003087244.1 acyl-CoA dehydrogenase family protein -
  GNT62_RS12790 (GNT62_12750) - 2642687..2643226 (-) 540 WP_179062936.1 CbrC family protein -
  GNT62_RS12795 (GNT62_12755) - 2643300..2644187 (-) 888 WP_003087246.1 SDR family NAD(P)-dependent oxidoreductase -
  GNT62_RS12800 (GNT62_12760) - 2644184..2645767 (-) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -
  GNT62_RS34425 - 2645890..2646009 (+) 120 Protein_2554 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=352060 GNT62_RS12780 WP_003087237.1 2640807..2641403(+) (recR) [Pseudomonas aeruginosa strain SE5458]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=352060 GNT62_RS12780 WP_003087237.1 2640807..2641403(+) (recR) [Pseudomonas aeruginosa strain SE5458]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCTCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTGGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48