Detailed information NTG0352052

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GNT62_RS08065
• Genome accession: NZ_CP046406
• Coordinates: 1646694..1647698 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SE5458
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1641694..1652698

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GNT62_RS08035 (GNT62_08015)	fghA	1641786..1642637 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
GNT62_RS08040 (GNT62_08020)	ispF	1642708..1643181 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GNT62_RS08045 (GNT62_08025)	truD	1643178..1644245 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
GNT62_RS08050 (GNT62_08030)	surE	1644233..1644982 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
GNT62_RS08055 (GNT62_08035)	-	1645015..1645650 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GNT62_RS08060 (GNT62_08040)	-	1645696..1646589 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
GNT62_RS08065 (GNT62_08045)	rpoS	1646694..1647698 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
GNT62_RS08070 (GNT62_08050)	fdxA	1648125..1648448 (-)	324	WP_003092272.1	ferredoxin FdxA	-
GNT62_RS08075 (GNT62_08055)	mutS	1648515..1651082 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
GNT62_RS08080 (GNT62_08060)	-	1651208..1652215 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=352052 GNT62_RS08065 WP_003113871.1 1646694..1647698(+) (rpoS) [Pseudomonas aeruginosa strain SE5458]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=352052 GNT62_RS08065 WP_003113871.1 1646694..1647698(+) (rpoS) [Pseudomonas aeruginosa strain SE5458]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653