Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GNT62_RS01905 Genome accession   NZ_CP046406
Coordinates   417852..419210 (+) Length   452 a.a.
NCBI ID   WP_023123794.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SE5458     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412852..424210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNT62_RS01885 (GNT62_01885) - 413689..414255 (-) 567 WP_003084491.1 hypothetical protein -
  GNT62_RS01890 (GNT62_01890) rsmD 414258..414854 (-) 597 WP_003084492.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GNT62_RS01895 (GNT62_01895) - 414854..416341 (-) 1488 WP_003084496.1 pitrilysin family protein -
  GNT62_RS01900 (GNT62_01900) - 416334..417731 (-) 1398 WP_003084498.1 pitrilysin family protein -
  GNT62_RS01905 (GNT62_01905) pilA 417852..419210 (+) 1359 WP_023123794.1 signal recognition particle-docking protein FtsY Machinery gene
  GNT62_RS01910 (GNT62_01910) ftsE 419207..419878 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  GNT62_RS01915 (GNT62_01915) ftsX 419878..420885 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  GNT62_RS01920 (GNT62_01920) rpoH 420999..421853 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  GNT62_RS01925 (GNT62_01925) - 421918..422523 (+) 606 WP_003084511.1 hypothetical protein -
  GNT62_RS01930 (GNT62_01930) mtgA 422528..423259 (-) 732 WP_003084512.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  GNT62_RS01935 (GNT62_01935) - 423296..423673 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  GNT62_RS01940 (GNT62_01940) thiS 423776..423976 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48040.46 Da        Isoelectric Point: 4.5795

>NTDB_id=352038 GNT62_RS01905 WP_023123794.1 417852..419210(+) (pilA) [Pseudomonas aeruginosa strain SE5458]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPTDQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAEP
PAPVAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSAS
IGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQV
DVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDA
VQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTK
LDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=352038 GNT62_RS01905 WP_023123794.1 417852..419210(+) (pilA) [Pseudomonas aeruginosa strain SE5458]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTACCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCCGAGCCG
CCGGCGCCGGTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGCCCCGAGGCGCC
CGTCGCACAACCCGAGCCTATCCTCGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCG
CTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGC
ATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCT
GCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGG
CCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTC
GACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGC
GAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGC
AGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACTGGCGCCGACTCCGCCTCGGTGATCTTCGACGCG
GTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGAT
GGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACG
CCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAA
CTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGG
CGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(162-227)

SRP54-type protein, GTPase domain (SRP54)

(247-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.706

96.46

0.46