Detailed information NTG0351951

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GNT61_RS06780
• Genome accession: NZ_CP046405
• Coordinates: 1448218..1449222 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SE5443
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1443218..1454222

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GNT61_RS06750 (GNT61_06740)	fghA	1443310..1444161 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
GNT61_RS06755 (GNT61_06745)	ispF	1444232..1444705 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GNT61_RS06760 (GNT61_06750)	truD	1444702..1445769 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
GNT61_RS06765 (GNT61_06755)	surE	1445757..1446506 (+)	750	WP_004345454.1	5'/3'-nucleotidase SurE	-
GNT61_RS06770 (GNT61_06760)	-	1446539..1447174 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GNT61_RS06775 (GNT61_06765)	-	1447220..1448113 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
GNT61_RS06780 (GNT61_06770)	rpoS	1448218..1449222 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
GNT61_RS06785 (GNT61_06775)	fdxA	1449648..1449971 (-)	324	WP_003092272.1	ferredoxin FdxA	-
GNT61_RS06790 (GNT61_06780)	mutS	1450038..1452605 (-)	2568	WP_079384482.1	DNA mismatch repair protein MutS	-
GNT61_RS06795 (GNT61_06785)	-	1452731..1453738 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=351951 GNT61_RS06780 WP_003113871.1 1448218..1449222(+) (rpoS) [Pseudomonas aeruginosa strain SE5443]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=351951 GNT61_RS06780 WP_003113871.1 1448218..1449222(+) (rpoS) [Pseudomonas aeruginosa strain SE5443]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGATGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653