Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GNT55_RS01950 Genome accession   NZ_CP046404
Coordinates   426053..427417 (+) Length   454 a.a.
NCBI ID   WP_043081797.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SE5416     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 421053..432417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNT55_RS01930 (GNT55_01930) - 421890..422456 (-) 567 WP_003117889.1 hypothetical protein -
  GNT55_RS01935 (GNT55_01935) rsmD 422459..423055 (-) 597 WP_009875718.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GNT55_RS01940 (GNT55_01940) - 423055..424542 (-) 1488 WP_028681149.1 pitrilysin family protein -
  GNT55_RS01945 (GNT55_01945) - 424535..425932 (-) 1398 WP_003084498.1 pitrilysin family protein -
  GNT55_RS01950 (GNT55_01950) pilA 426053..427417 (+) 1365 WP_043081797.1 signal recognition particle-docking protein FtsY Machinery gene
  GNT55_RS01955 (GNT55_01955) ftsE 427414..428085 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  GNT55_RS01960 (GNT55_01960) ftsX 428085..429092 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  GNT55_RS01965 (GNT55_01965) rpoH 429206..430060 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  GNT55_RS01970 (GNT55_01970) - 430125..430730 (+) 606 WP_003084511.1 hypothetical protein -
  GNT55_RS01975 (GNT55_01975) mtgA 430735..431466 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  GNT55_RS01980 (GNT55_01980) - 431503..431880 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  GNT55_RS01985 (GNT55_01985) thiS 431983..432183 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48236.67 Da        Isoelectric Point: 4.5525

>NTDB_id=351835 GNT55_RS01950 WP_043081797.1 426053..427417(+) (pilA) [Pseudomonas aeruginosa strain SE5416]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAEP
PAPVAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTS
ASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPL
QVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIF
DAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLAL
TKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=351835 GNT55_RS01950 WP_043081797.1 426053..427417(+) (pilA) [Pseudomonas aeruginosa strain SE5416]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCCGAGCCG
CCGGCGCCGGTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGCCCTGAGGCGCC
CGTCGCACAACCCGAGCCTATCCTCGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGG
CCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGC
GCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGAC
GCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGG
AGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTG
CAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAA
GCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGC
AGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTC
GACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAA
CCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGC
TCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTTGCCCTG
ACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGG
TGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACG
CATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(164-229)

SRP54-type protein, GTPase domain (SRP54)

(249-448)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.489

96.476

0.458