Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E3D81_RS00970 Genome accession   NZ_CP038159
Coordinates   216427..217815 (-) Length   462 a.a.
NCBI ID   WP_134776099.1    Uniprot ID   A0A4P7DSG5
Organism   Sphingobacterium sp. CZ-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 211427..222815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3D81_RS00945 (E3D81_00945) - 211476..213017 (-) 1542 WP_134776096.1 NAD(P)/FAD-dependent oxidoreductase -
  E3D81_RS00950 (E3D81_00950) - 213168..213746 (+) 579 WP_099367421.1 LemA family protein -
  E3D81_RS00955 (E3D81_00955) - 213825..214253 (+) 429 WP_134776097.1 TPM domain-containing protein -
  E3D81_RS00960 (E3D81_00960) - 214264..215091 (+) 828 WP_134776098.1 TPM domain-containing protein -
  E3D81_RS00965 (E3D81_00965) - 215129..216256 (+) 1128 WP_099367423.1 TlpA disulfide reductase family protein -
  E3D81_RS00970 (E3D81_00970) radA 216427..217815 (-) 1389 WP_134776099.1 DNA repair protein RadA Machinery gene
  E3D81_RS00975 (E3D81_00975) - 217885..218391 (+) 507 WP_099367093.1 RNA polymerase sigma factor -
  E3D81_RS00980 (E3D81_00980) - 218391..219020 (+) 630 WP_134776100.1 hypothetical protein -
  E3D81_RS00985 (E3D81_00985) - 219022..220200 (-) 1179 WP_134776101.1 dipeptidase -
  E3D81_RS00990 (E3D81_00990) - 220197..221930 (-) 1734 WP_134776102.1 serine hydrolase domain-containing protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50846.33 Da        Isoelectric Point: 6.5082

>NTDB_id=351830 E3D81_RS00970 WP_134776099.1 216427..217815(-) (radA) [Sphingobacterium sp. CZ-2]
MAKTKSAYFCQSCGYESPKWLGQCPSCKQWNSFVEEVVEKSSSRVPEWRSTSTVPGTNKRSNKAAIIHEIVYSEEQRILS
PDKEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSNANCYILTETSM
QNIFKQIDQVEPNVVVIDSIQTLHTAQIESAPGSVSQVRECTAELLRFAKETNTPVFIVGHITKDGSIAGPKVLEHMVDT
VLQFEGDRHHVYRILRAVKNRFGSSSELGIYEMQGSGLREVSNPSEIMLSQREEPVSGIAVAAMLEGIRPLMIEVQALVS
NSAFGTPQRSSTGFDTKRLNMLLAVLEKRFGLRLSAQDVFLNIAGGLRVEDPAIDLAVIAAIISSQQDIALPANITFAGE
VGLSGEIRAVNRIEQRIQEAEKLGFEQIFISKYNSKGLDVKKYGILVRPVAQLEDIFRILFG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=351830 E3D81_RS00970 WP_134776099.1 216427..217815(-) (radA) [Sphingobacterium sp. CZ-2]
ATGGCTAAAACGAAATCAGCATATTTCTGTCAATCCTGTGGTTATGAATCACCGAAATGGCTAGGACAATGTCCATCCTG
TAAACAATGGAACAGCTTTGTGGAAGAAGTGGTGGAAAAAAGTTCCTCTCGGGTTCCTGAATGGCGAAGTACCAGTACGG
TACCCGGAACCAATAAACGCAGCAACAAAGCGGCAATCATCCATGAAATCGTTTATTCGGAAGAGCAACGGATCTTAAGT
CCGGACAAGGAGTTCAACCGCGTCTTGGGGGGTGGGATCGTTCCGGGATCCTTGGTCCTGATCGGCGGGGAACCGGGCAT
CGGTAAATCAACCCTGATGTTGCAACTTGCCCTTTCCATTCCGCAGGTGAAAACATTATATATCTCCGGGGAGGAAAGTG
AACAGCAGATCAAGATGCGGGCGGAACGTCTCTCCCAGAGTTCCAACGCCAACTGTTATATCCTGACGGAAACCTCCATG
CAGAACATCTTTAAACAGATCGATCAGGTAGAGCCGAATGTGGTGGTGATAGATTCCATACAGACTTTACATACCGCGCA
GATTGAATCTGCTCCGGGTTCTGTATCGCAGGTAAGGGAATGTACGGCGGAGTTATTGCGTTTTGCCAAGGAAACCAATA
CCCCGGTTTTTATTGTAGGGCATATCACGAAAGATGGCAGTATTGCCGGGCCTAAAGTGCTGGAACATATGGTGGATACG
GTGCTTCAGTTTGAAGGCGACCGGCATCATGTGTACCGCATTCTGCGAGCGGTGAAGAATCGTTTTGGTTCTTCCTCGGA
ATTAGGGATCTATGAGATGCAGGGATCGGGGCTGAGGGAGGTTTCCAATCCTTCAGAGATCATGCTGTCCCAGCGGGAGG
AACCTGTCAGTGGGATCGCTGTAGCGGCCATGCTGGAGGGTATTCGGCCTTTGATGATCGAGGTACAGGCATTGGTGTCA
AATTCAGCTTTTGGTACCCCACAACGAAGCTCTACGGGTTTTGATACAAAACGGTTGAATATGTTGTTGGCGGTATTGGA
GAAAAGGTTTGGCCTTAGGCTGAGTGCGCAGGATGTATTTTTAAATATTGCAGGAGGGTTAAGGGTGGAAGATCCGGCTA
TTGATCTGGCGGTGATTGCGGCAATTATTTCCTCCCAGCAGGATATCGCCTTGCCAGCGAATATTACTTTTGCGGGTGAG
GTGGGATTATCGGGGGAAATAAGAGCGGTGAATAGGATTGAGCAAAGGATTCAGGAAGCTGAGAAATTGGGCTTTGAGCA
GATTTTTATTTCGAAGTATAATAGTAAGGGCTTGGATGTGAAGAAGTATGGGATATTGGTGCGGCCCGTAGCGCAATTGG
AAGATATTTTCAGGATATTGTTTGGGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-434)

AAA domain (AAA_25)

(76-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7DSG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.648

100

0.541
  radA Streptococcus pneumoniae Rx1

50.862

100

0.511
  radA Streptococcus pneumoniae D39

50.862

100

0.511
  radA Streptococcus pneumoniae R6

50.862

100

0.511
  radA Streptococcus pneumoniae TIGR4

50.862

100

0.511
  radA Streptococcus mitis NCTC 12261

50.862

100

0.511
  radA Streptococcus mitis SK321

52.381

95.455

0.5

Multiple sequence alignment