Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | E3E17_RS05355 | Genome accession | NZ_CP038153 |
| Coordinates | 995057..996118 (+) | Length | 353 a.a. |
| NCBI ID | WP_003598111.1 | Uniprot ID | A0A243PT23 |
| Organism | Lacticaseibacillus paracasei strain TCS | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 966791..1006081 | 995057..996118 | within | 0 |
Gene organization within MGE regions
Location: 966791..1006081
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3E17_RS05205 | - | 966791..967789 (-) | 999 | WP_012490951.1 | IS30 family transposase | - |
| E3E17_RS05210 | - | 968027..969355 (-) | 1329 | WP_012491272.1 | metallophosphoesterase | - |
| E3E17_RS05215 | - | 969546..969812 (+) | 267 | WP_003564140.1 | ACT domain-containing protein | - |
| E3E17_RS05220 | - | 969861..971204 (+) | 1344 | WP_014951764.1 | PFL family protein | - |
| E3E17_RS05225 | - | 971314..972369 (+) | 1056 | WP_003569473.1 | competence protein CoiA | - |
| E3E17_RS05230 | - | 972559..973194 (-) | 636 | WP_003601677.1 | DsbA family protein | - |
| E3E17_RS05235 | - | 973264..973857 (-) | 594 | WP_003601679.1 | CYTH domain-containing protein | - |
| E3E17_RS05240 | - | 974051..974722 (+) | 672 | WP_003564145.1 | GTP pyrophosphokinase family protein | - |
| E3E17_RS05245 | - | 974724..975521 (+) | 798 | WP_003564146.1 | NAD kinase | - |
| E3E17_RS05250 | - | 975521..976423 (+) | 903 | WP_012491275.1 | RluA family pseudouridine synthase | - |
| E3E17_RS05255 | - | 976532..977590 (-) | 1059 | WP_012491276.1 | FAD:protein FMN transferase | - |
| E3E17_RS05260 | - | 977747..978382 (-) | 636 | WP_003569480.1 | copper homeostasis protein CutC | - |
| E3E17_RS05265 | - | 978404..979222 (-) | 819 | WP_014566471.1 | undecaprenyl-diphosphate phosphatase | - |
| E3E17_RS05270 | - | 979425..980465 (-) | 1041 | WP_012491278.1 | lactonase family protein | - |
| E3E17_RS05275 | - | 980737..981114 (+) | 378 | WP_014566472.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| E3E17_RS05280 | rpsN | 981226..981495 (-) | 270 | WP_003564153.1 | 30S ribosomal protein S14 | - |
| E3E17_RS05285 | - | 981623..982600 (-) | 978 | WP_024109435.1 | GMP reductase | - |
| E3E17_RS05290 | - | 982840..983787 (-) | 948 | WP_003564155.1 | magnesium transporter CorA family protein | - |
| E3E17_RS05295 | - | 983853..984695 (+) | 843 | WP_012491280.1 | methyltransferase domain-containing protein | - |
| E3E17_RS05305 | trmL | 984950..985459 (+) | 510 | WP_003564157.1 | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | - |
| E3E17_RS05310 | - | 985586..985996 (+) | 411 | WP_003564159.1 | DUF1149 family protein | - |
| E3E17_RS05315 | - | 986169..988490 (+) | 2322 | WP_003604697.1 | DNA translocase FtsK | - |
| E3E17_RS05320 | yfmF | 988499..989761 (+) | 1263 | WP_012491281.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| E3E17_RS05325 | yfmH | 989758..991050 (+) | 1293 | WP_014566474.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| E3E17_RS05330 | ymfI | 991050..991778 (+) | 729 | WP_003569514.1 | elongation factor P 5-aminopentanone reductase | - |
| E3E17_RS05335 | - | 991865..992794 (+) | 930 | WP_003593861.1 | helix-turn-helix domain-containing protein | - |
| E3E17_RS05340 | pgsA | 992791..993384 (+) | 594 | WP_003564171.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| E3E17_RS05350 | cinA | 993759..995000 (+) | 1242 | WP_012491282.1 | competence/damage-inducible protein A | Machinery gene |
| E3E17_RS05355 | recA | 995057..996118 (+) | 1062 | WP_003598111.1 | recombinase RecA | Machinery gene |
| E3E17_RS05360 | rny | 996420..997991 (+) | 1572 | WP_003657913.1 | ribonuclease Y | - |
| E3E17_RS05365 | - | 998085..998735 (-) | 651 | WP_012491283.1 | YigZ family protein | - |
| E3E17_RS05370 | - | 998763..1000025 (+) | 1263 | WP_016379935.1 | helicase-related protein | - |
| E3E17_RS05375 | - | 1000238..1000699 (+) | 462 | WP_003583965.1 | ComF family protein | - |
| E3E17_RS05380 | hpf | 1000823..1001380 (+) | 558 | WP_003569531.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| E3E17_RS05390 | secA | 1001714..1004077 (+) | 2364 | WP_003578257.1 | preprotein translocase subunit SecA | - |
| E3E17_RS05395 | prfB | 1004202..1005318 (+) | 1117 | WP_096772597.1 | peptide chain release factor 2 | - |
| E3E17_RS05400 | ftsE | 1005395..1006081 (+) | 687 | WP_012491286.1 | cell division ATP-binding protein FtsE | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37745.94 Da Isoelectric Point: 5.8234
>NTDB_id=351789 E3E17_RS05355 WP_003598111.1 995057..996118(+) (recA) [Lacticaseibacillus paracasei strain TCS]
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV
Nucleotide
Download Length: 1062 bp
>NTDB_id=351789 E3E17_RS05355 WP_003598111.1 995057..996118(+) (recA) [Lacticaseibacillus paracasei strain TCS]
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGCG
CATTGAAGTTTTATGCGACTGTTCGGTTAGAAATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGCG
CATTGAAGTTTTATGCGACTGTTCGGTTAGAAATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA
Similar proteins
Only experimentally validated proteins are listed.