Detailed information NTG0351744

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GNT46_RS07325
• Genome accession: NZ_CP046403
• Coordinates: 1556709..1557713 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SE5369
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1551709..1562713

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GNT46_RS07295 (GNT46_07300)	fghA	1551801..1552652 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
GNT46_RS07300 (GNT46_07305)	ispF	1552723..1553196 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GNT46_RS07305 (GNT46_07310)	truD	1553193..1554260 (+)	1068	WP_016852567.1	tRNA pseudouridine(13) synthase TruD	-
GNT46_RS07310 (GNT46_07315)	surE	1554248..1554997 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
GNT46_RS07315 (GNT46_07320)	-	1555030..1555665 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GNT46_RS07320 (GNT46_07325)	-	1555711..1556604 (+)	894	WP_016852568.1	peptidoglycan DD-metalloendopeptidase family protein	-
GNT46_RS07325 (GNT46_07330)	rpoS	1556709..1557713 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
GNT46_RS07330 (GNT46_07335)	istA	1557934..1559448 (+)	1515	WP_019364253.1	IS21-like element IS1491 family transposase	-
GNT46_RS07335 (GNT46_07340)	istB	1559466..1560221 (+)	756	WP_003290589.1	IS21-like element ISPpu7 family helper ATPase IstB	-
GNT46_RS07340 (GNT46_07345)	fdxA	1560769..1561092 (-)	324	WP_003119354.1	ferredoxin FdxA	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=351744 GNT46_RS07325 WP_003113871.1 1556709..1557713(+) (rpoS) [Pseudomonas aeruginosa strain SE5369]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=351744 GNT46_RS07325 WP_003113871.1 1556709..1557713(+) (rpoS) [Pseudomonas aeruginosa strain SE5369]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653