Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E2544_RS11570 Genome accession   NZ_CP038034
Coordinates   2465219..2466580 (+) Length   453 a.a.
NCBI ID   WP_042797182.1    Uniprot ID   A0A6S7FJW4
Organism   Achromobacter insolitus strain LCu2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2460219..2471580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2544_RS11550 (E2544_11560) hpaE 2461260..2462726 (+) 1467 WP_042794212.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase -
  E2544_RS11555 (E2544_11565) hpaD 2462765..2463616 (+) 852 WP_042794211.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  E2544_RS11560 (E2544_11570) hpaR 2463617..2464081 (-) 465 WP_063640362.1 homoprotocatechuate degradation operon regulator HpaR -
  E2544_RS11565 (E2544_11575) - 2464180..2464794 (-) 615 WP_042794209.1 hypothetical protein -
  E2544_RS11570 (E2544_11580) radA 2465219..2466580 (+) 1362 WP_042797182.1 DNA repair protein RadA Machinery gene
  E2544_RS11575 (E2544_11585) - 2466674..2467453 (+) 780 WP_076814408.1 sulfite exporter TauE/SafE family protein -
  E2544_RS11580 (E2544_11590) - 2467632..2467871 (+) 240 WP_042794207.1 hypothetical protein -
  E2544_RS11585 (E2544_11595) - 2468006..2468962 (-) 957 WP_063640361.1 2-hydroxyacid dehydrogenase -
  E2544_RS11590 (E2544_11600) - 2469065..2470051 (-) 987 WP_187639882.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  E2544_RS11595 (E2544_11605) - 2470118..2471131 (-) 1014 WP_149064282.1 tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48145.26 Da        Isoelectric Point: 6.9553

>NTDB_id=351672 E2544_RS11570 WP_042797182.1 2465219..2466580(+) (radA) [Achromobacter insolitus strain LCu2]
MAKSRTVYVCAECGGTTPKWQGKCPHCNAWNTLEETVESSAPAAASHRYAPLAAASPVRSLSEIEARETPRQPTGLEEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSEVTNVLYVTGEESAEQVALRARRLGLQTGNVNLLAEIRLESIQAA
VSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHAPN
PRRLTVGLEGNRLAMLLAVLHRHAGVSTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPRGLIAFGEVGLAGE
IRPAPRGQERLREAAKLGFSIALIPKANAPRQPIEGLEIWAVDRLDAALDKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=351672 E2544_RS11570 WP_042797182.1 2465219..2466580(+) (radA) [Achromobacter insolitus strain LCu2]
ATGGCCAAATCCCGAACCGTATACGTGTGCGCCGAATGTGGCGGCACCACCCCGAAGTGGCAGGGCAAATGCCCGCATTG
CAACGCCTGGAACACGCTGGAAGAAACCGTGGAGTCATCGGCGCCCGCCGCTGCCTCCCATCGCTACGCGCCGCTGGCGG
CCGCCAGCCCGGTGCGCAGCCTGTCCGAAATCGAAGCCCGCGAAACACCGCGCCAGCCTACGGGGCTGGAAGAGTTCGAC
CGCGTCTTGGGCGGCGGCCTGGTGGCCGGCGCCGTCGTGTTGATCGGCGGCGATCCCGGCATCGGTAAATCCACCTTGCT
GCTGCAGGCGCTGGCCTCGTTGTCCGAAGTCACCAACGTTCTGTATGTCACCGGCGAGGAATCCGCCGAGCAGGTCGCCC
TGCGCGCGCGGCGGCTGGGCCTGCAAACCGGCAATGTGAACCTGTTGGCCGAGATCAGGCTGGAGTCGATCCAGGCTGCG
GTGTCGGAGCAGAAGCCCACCGTGGCCGTCATCGACTCGATCCAGACCCTGTACAGCGGCGAGCTGACCGCCGCTCCGGG
CTCGGTCTCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCCTGGCCAAGCAGACGGGCATCGCCATCGTCATGATCG
GCCACGTCACCAAGGACGGCGCGCTGGCCGGGCCGCGGGTGCTGGAGCACATCGTCGATACCGTGTTGTATTTCGAGGGC
GACACGCACTCGTCGTTCCGCCTGGTGCGCGCCTTCAAGAACCGTTTCGGAGCGGTCAACGAGCTGGGCGTCTTCGCCAT
GACGGATCGCGGACTGCGGGGCGTGGCCAATCCGTCCGCGCTGTTCCTGTCGCAGCATGAACAACAGGTCGCGGGTTCCT
GCGTGATGGCCACGCAGGAAGGCACGCGACCGCTGCTGGTGGAAATCCAGGCATTGGTCGACAGCTCGCACGCGCCCAAT
CCGCGCCGCCTGACCGTGGGCCTGGAAGGCAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGCCGGCGTCTC
CACCTTTGACCAGGACGTCTTCGTCAACGCGGTGGGCGGCGTGCGCATCACCGAGCCCGCGGCCGATTTGCCGGTACTGC
TGGCCATCATGTCTTCGCTGCGGGACAAGCCATTGCCGCGCGGGCTGATTGCCTTCGGCGAAGTCGGCCTGGCAGGCGAA
ATCCGGCCGGCGCCACGCGGGCAGGAACGCTTGCGCGAAGCGGCCAAGCTGGGGTTTTCAATCGCCCTGATTCCCAAGGC
CAATGCGCCGCGCCAGCCCATCGAAGGGCTGGAGATCTGGGCCGTGGACCGGCTGGATGCCGCGCTCGATAAATTGCGCT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S7FJW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.219

100

0.506
  radA Streptococcus mitis NCTC 12261

47.02

100

0.47
  radA Streptococcus pneumoniae D39

49.296

94.04

0.464
  radA Streptococcus pneumoniae TIGR4

49.296

94.04

0.464
  radA Streptococcus mitis SK321

49.296

94.04

0.464
  radA Streptococcus pneumoniae R6

49.296

94.04

0.464
  radA Streptococcus pneumoniae Rx1

49.296

94.04

0.464

Multiple sequence alignment