Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CAP2UW1_RS21415 Genome accession   NC_013194
Coordinates   4904003..4905430 (-) Length   475 a.a.
NCBI ID   WP_015768700.1    Uniprot ID   -
Organism   Candidatus Accumulibacter phosphatis     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4899003..4910430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAP2UW1_RS21380 (CAP2UW1_4302) - 4899283..4899996 (-) 714 WP_015768693.1 DsbC family protein -
  CAP2UW1_RS21385 (CAP2UW1_4303) - 4900030..4901199 (-) 1170 WP_015768694.1 UbiH/UbiF family hydroxylase -
  CAP2UW1_RS21390 (CAP2UW1_4304) - 4901285..4901665 (+) 381 WP_015768695.1 hypothetical protein -
  CAP2UW1_RS21395 (CAP2UW1_4305) - 4901805..4902122 (-) 318 WP_015768696.1 PsiF family protein -
  CAP2UW1_RS21400 (CAP2UW1_4306) hprK 4902170..4903114 (-) 945 WP_015768697.1 HPr(Ser) kinase/phosphatase -
  CAP2UW1_RS21405 (CAP2UW1_4307) ptsN 4903118..4903564 (-) 447 WP_015768698.1 PTS IIA-like nitrogen regulatory protein PtsN -
  CAP2UW1_RS21410 (CAP2UW1_4308) hpf 4903654..4903986 (-) 333 WP_015768699.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CAP2UW1_RS21415 (CAP2UW1_4309) rpoN/rpoN1 4904003..4905430 (-) 1428 WP_015768700.1 RNA polymerase factor sigma-54 Machinery gene
  CAP2UW1_RS21420 (CAP2UW1_4310) lptB 4905512..4906246 (-) 735 WP_015768701.1 LPS export ABC transporter ATP-binding protein -
  CAP2UW1_RS21425 (CAP2UW1_4311) recX 4906249..4906686 (-) 438 WP_291911967.1 recombination regulator RecX -
  CAP2UW1_RS21430 (CAP2UW1_4312) recA 4906705..4907721 (-) 1017 WP_015768703.1 recombinase RecA Machinery gene
  CAP2UW1_RS21435 (CAP2UW1_4313) - 4907881..4909752 (-) 1872 WP_041567953.1 FimV family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 52718.40 Da        Isoelectric Point: 4.7742

>NTDB_id=35166 CAP2UW1_RS21415 WP_015768700.1 4904003..4905430(-) (rpoN/rpoN1) [Candidatus Accumulibacter phosphatis]
MKPSLQLKLTQHLALTPQLQQSIRLLQLSTLELEHELESFLSANPLLERDEEYSLPEANLRESGVEQAAEQSQTDERADS
SLAGDDSWLGEDGGYAGSSGSSGSFDDDDDSDYQDVQAATVSLREHLLAQLGLMTLSSRDSVLVRCLIEALDDDGYLTQS
LDELADSMPPELEIEPEELQIALNHLQHLDPTGVGARSPVECLALQLEALPVDPTRTLALEIVRQHLELLAHHDFPRLKK
HTGCDDDELRAAHLLICSLNPRPGAQYASSDTRYVTPDVVVRKVRGQWAVNVNSDAFPRIRINSLYAQILSRQRGSGLAS
QLQEARWLIRNVQQRFDTILRVAQAIVERQRQFLDHGEVAMRPLVLREIADTLGLHESTISRVTTQKYMATPRGIYELKY
FFGSHVSTDAGGACSATAIRALIKQMISAEEPTKPLSDSQISEVLGQQGIVVARRTIAKYREALNIPPVNLRKSL

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=35166 CAP2UW1_RS21415 WP_015768700.1 4904003..4905430(-) (rpoN/rpoN1) [Candidatus Accumulibacter phosphatis]
ATGAAACCATCCCTCCAGCTCAAGCTCACCCAGCATCTAGCGTTGACCCCACAACTGCAACAGTCGATCCGACTGTTGCA
GCTTTCGACGCTTGAACTCGAACACGAGCTGGAGAGTTTTCTGTCGGCAAACCCGCTGCTCGAACGTGACGAGGAGTATT
CGCTGCCTGAGGCGAATTTGCGGGAAAGTGGCGTCGAGCAAGCCGCTGAGCAGAGCCAGACCGACGAGCGCGCCGATTCA
TCGCTGGCCGGCGACGATAGCTGGCTCGGCGAAGACGGCGGCTACGCTGGGTCGTCCGGTTCGTCGGGATCCTTCGACGA
CGACGACGACAGCGACTATCAGGACGTTCAGGCGGCCACCGTCTCGTTGCGCGAGCACCTGCTGGCGCAACTCGGGCTGA
TGACCCTGTCCAGTCGTGACAGCGTTCTCGTTCGTTGCCTGATCGAGGCACTCGACGATGACGGCTATCTCACCCAGTCC
CTGGATGAACTCGCCGACAGCATGCCGCCGGAGCTCGAGATCGAACCGGAAGAACTGCAGATCGCGCTCAACCACCTGCA
GCACCTCGATCCCACCGGCGTCGGCGCGCGCAGCCCGGTGGAATGTCTGGCGCTCCAACTCGAAGCCTTGCCGGTCGACC
CGACCCGCACGCTGGCACTGGAAATCGTTCGCCAGCATCTGGAGCTTCTCGCCCATCATGATTTCCCCCGGCTCAAGAAG
CACACTGGGTGCGACGACGACGAACTGCGCGCTGCGCACCTGCTGATCTGCAGCCTGAACCCCCGGCCGGGCGCACAGTA
CGCGTCGTCCGATACCCGCTACGTGACACCCGATGTGGTAGTGCGCAAAGTCCGCGGCCAGTGGGCGGTCAACGTCAACT
CGGACGCCTTCCCACGCATACGCATCAACAGCCTGTACGCCCAGATTCTCTCCCGCCAGCGGGGTTCCGGTCTGGCCAGC
CAACTGCAGGAAGCGCGCTGGCTGATACGAAATGTGCAGCAACGGTTTGACACGATCCTGCGCGTGGCGCAGGCTATCGT
CGAACGTCAGCGTCAGTTCCTCGACCACGGCGAGGTGGCGATGCGCCCGCTGGTATTGCGGGAGATCGCTGACACGCTGG
GACTGCATGAGTCGACGATATCGCGGGTGACGACACAGAAGTACATGGCGACACCACGCGGGATTTATGAGCTGAAGTAT
TTTTTTGGCAGCCACGTCAGCACCGATGCGGGTGGGGCGTGCTCAGCAACGGCCATTCGCGCCCTGATCAAACAGATGAT
CAGCGCCGAAGAGCCGACGAAGCCGCTTTCGGATAGCCAGATATCCGAGGTTCTTGGCCAGCAGGGTATTGTCGTTGCAC
GGCGAACAATTGCCAAATACCGTGAAGCGCTGAATATCCCGCCGGTCAATTTACGCAAGTCCCTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(318-473)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(113-306)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

57.285

100

0.604

Multiple sequence alignment