Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E2P86_RS17225 Genome accession   NZ_CP038029
Coordinates   4188032..4189417 (-) Length   461 a.a.
NCBI ID   WP_134433853.1    Uniprot ID   -
Organism   Sphingobacterium psychroaquaticum strain SJ-25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4183032..4194417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2P86_RS17210 (E2P86_17210) - 4183913..4184806 (+) 894 WP_134433851.1 AraC family transcriptional regulator -
  E2P86_RS17215 (E2P86_17215) nagB 4184860..4186785 (-) 1926 WP_085473614.1 glucosamine-6-phosphate deaminase -
  E2P86_RS17220 (E2P86_17220) - 4187206..4187880 (+) 675 WP_134433852.1 TlpA disulfide reductase family protein -
  E2P86_RS17225 (E2P86_17225) radA 4188032..4189417 (-) 1386 WP_134433853.1 DNA repair protein RadA Machinery gene
  E2P86_RS17230 (E2P86_17230) - 4189487..4190005 (+) 519 WP_085473611.1 RNA polymerase sigma factor -
  E2P86_RS17235 (E2P86_17235) - 4189993..4190610 (+) 618 WP_134433854.1 hypothetical protein -
  E2P86_RS18340 - 4190660..4190794 (+) 135 WP_262507880.1 hypothetical protein -
  E2P86_RS17240 (E2P86_17240) - 4190800..4191186 (+) 387 WP_085473609.1 RidA family protein -
  E2P86_RS17245 (E2P86_17245) - 4191190..4192113 (+) 924 WP_085473608.1 EamA family transporter -
  E2P86_RS17250 (E2P86_17250) - 4192199..4192888 (+) 690 WP_134433855.1 hypothetical protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50345.76 Da        Isoelectric Point: 6.7507

>NTDB_id=351636 E2P86_RS17225 WP_134433853.1 4188032..4189417(-) (radA) [Sphingobacterium psychroaquaticum strain SJ-25]
MAKSKSSFFCQHCGYESPKWLGQCPSCKQWNAFVEEVVEKGSSKVPEWRSSTTQVAGKKANRAAIINEIVYQDEQRLATP
DREFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALGIPKVKTLYISGEESEQQIKMRAERLSQQSTANCYILTETSTQ
NIFKQIEVVQPDIVVIDSIQTLHSSQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSSSELGIYEMQGAGLREVSNPSEIMLSQREEPVSGVAIAAMLEGARPLLIEVQALVST
SAFGNAQRTSTGFDTKRLSMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVVAAIISSQQDIPLPPQVSFAGEV
GLSGEIRAVNRIEQRIAEAEKLGFDGIFISKYNTKGLDAKKFNIAIRPMAKLEDLFSALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=351636 E2P86_RS17225 WP_134433853.1 4188032..4189417(-) (radA) [Sphingobacterium psychroaquaticum strain SJ-25]
ATGGCTAAGTCTAAATCTTCTTTTTTTTGTCAACATTGCGGATACGAATCACCGAAATGGTTGGGGCAATGTCCTTCTTG
TAAACAATGGAACGCTTTCGTGGAGGAAGTGGTGGAGAAAGGGAGCTCTAAGGTTCCCGAATGGCGAAGTAGCACGACGC
AGGTTGCCGGGAAGAAGGCGAATAGGGCAGCTATCATCAATGAGATTGTTTATCAGGATGAGCAAAGGTTAGCGACGCCA
GATCGCGAGTTTAATCGTGTGTTAGGCGGAGGAATCGTTCCGGGGTCATTGGTGCTGATCGGTGGTGAGCCTGGTATTGG
AAAGTCGACCCTGATGTTGCAATTGGCACTTGGTATCCCTAAAGTAAAAACCTTATATATTTCCGGAGAGGAAAGTGAGC
AGCAGATTAAGATGCGTGCCGAACGGTTATCACAACAGTCAACAGCCAATTGTTATATTCTGACGGAGACGTCTACACAA
AATATTTTTAAGCAGATAGAGGTTGTTCAGCCTGATATTGTTGTCATTGATTCCATTCAGACCTTACATTCCTCGCAGAT
AGAGTCTGCGCCAGGGTCTGTTTCTCAGGTGCGAGAGTGTACTGCCGAGCTATTACGCTTTGCGAAAGAAACGAGTACAC
CTGTCTTCATTGTGGGACATATCACGAAGGATGGTTCGATTGCCGGACCGAAAGTTTTGGAGCATATGGTCGATACGGTT
TTACAATTTGAAGGCGACCGTCATCATGTATATCGGATTTTAAGGGCGGTTAAAAACAGATTTGGTTCCTCTTCGGAGTT
GGGTATTTATGAGATGCAGGGAGCCGGTTTGCGTGAGGTATCCAATCCATCGGAAATTATGCTGTCGCAGCGCGAAGAGC
CTGTTAGTGGGGTTGCTATTGCAGCGATGCTGGAAGGGGCACGCCCCCTCCTGATTGAGGTGCAGGCATTGGTTAGTACT
TCCGCTTTTGGAAATGCACAACGTACATCGACCGGTTTTGATACCAAACGGCTGAGCATGTTGCTGGCGGTGTTGGAAAA
ACGATTTGGTTTTCGTTTGAGTGCACAGGATGTGTTTTTGAATATCGCAGGCGGACTTCGAGTCGAAGATCCGGCGATTG
ACTTGGCGGTTGTTGCGGCGATCATTTCCTCTCAACAAGATATTCCATTGCCGCCACAAGTTTCCTTTGCGGGAGAGGTG
GGCCTTTCCGGTGAAATTCGTGCTGTGAATCGTATCGAACAGCGAATTGCGGAGGCGGAGAAGCTTGGGTTCGATGGGAT
CTTTATTTCCAAATATAACACCAAAGGGCTCGACGCGAAAAAGTTTAATATTGCTATCCGTCCGATGGCAAAGTTAGAAG
ATTTGTTTAGCGCCTTGTTTGGGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(72-225)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

52.278

100

0.523
  radA Streptococcus pneumoniae Rx1

52.278

100

0.523
  radA Streptococcus pneumoniae D39

52.278

100

0.523
  radA Streptococcus pneumoniae TIGR4

52.278

100

0.523
  radA Streptococcus mitis NCTC 12261

52.278

100

0.523
  radA Bacillus subtilis subsp. subtilis str. 168

54.402

96.095

0.523
  radA Streptococcus mitis SK321

54.338

95.011

0.516

Multiple sequence alignment