Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   E3U39_RS17770 Genome accession   NZ_CP038028
Coordinates   3508925..3509725 (+) Length   266 a.a.
NCBI ID   WP_015417798.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3503925..3514725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS17750 (E3U39_17750) - 3504047..3504892 (+) 846 WP_007612503.1 TlyA family RNA methyltransferase -
  E3U39_RS17755 (E3U39_17755) argR 3504989..3505438 (+) 450 WP_003153173.1 transcriptional regulator ArgR -
  E3U39_RS17760 (E3U39_17760) recN 3505470..3507200 (+) 1731 WP_007408359.1 DNA repair protein RecN Machinery gene
  E3U39_RS17765 (E3U39_17765) spoIVB 3507364..3508644 (+) 1281 WP_053573204.1 SpoIVB peptidase -
  E3U39_RS17770 (E3U39_17770) spo0A 3508925..3509725 (+) 801 WP_015417798.1 sporulation transcription factor Spo0A Regulator
  E3U39_RS17775 (E3U39_17775) alr 3509874..3511055 (-) 1182 WP_053573205.1 alanine racemase -
  E3U39_RS17780 (E3U39_17780) - 3511231..3511443 (-) 213 WP_003153181.1 spore germination protein -
  E3U39_RS17785 (E3U39_17785) - 3511569..3511781 (-) 213 WP_007408362.1 spore germination protein -
  E3U39_RS17790 (E3U39_17790) - 3511907..3513025 (-) 1119 WP_031378952.1 NADH-dependent flavin oxidoreductase -
  E3U39_RS21570 - 3513119..3513256 (-) 138 WP_014470646.1 hypothetical protein -
  E3U39_RS17800 (E3U39_17800) - 3513553..3514185 (-) 633 WP_007408365.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29657.13 Da        Isoelectric Point: 6.1630

>NTDB_id=351627 E3U39_RS17770 WP_015417798.1 3508925..3509725(+) (spo0A) [Bacillus amyloliquefaciens strain FS1092]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRNQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=351627 E3U39_RS17770 WP_015417798.1 3508925..3509725(+) (spo0A) [Bacillus amyloliquefaciens strain FS1092]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCAGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTTGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAACCAGCCTGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACTGCAAGCCGTGTAGAACGGG
CCATCCGGCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATCGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAGCCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

94.757

100

0.951

Multiple sequence alignment