Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   E3U39_RS17265 Genome accession   NZ_CP038028
Coordinates   3423676..3424443 (+) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3418676..3429443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS17235 (E3U39_17235) - 3418959..3421091 (+) 2133 WP_053573187.1 HD family phosphohydrolase -
  E3U39_RS17240 (E3U39_17240) ybeY 3421092..3421565 (+) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  E3U39_RS17245 (E3U39_17245) - 3421546..3421920 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  E3U39_RS17250 (E3U39_17250) - 3422044..3422454 (+) 411 WP_003152976.1 cytidine deaminase -
  E3U39_RS17255 (E3U39_17255) era 3422435..3423340 (+) 906 WP_007408285.1 GTPase Era -
  E3U39_RS17260 (E3U39_17260) - 3423496..3423639 (+) 144 WP_007408286.1 YqzL family protein -
  E3U39_RS17265 (E3U39_17265) recO 3423676..3424443 (+) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  E3U39_RS17270 (E3U39_17270) glyQ 3424745..3425632 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  E3U39_RS17275 (E3U39_17275) glyS 3425625..3427664 (+) 2040 WP_053573188.1 glycine--tRNA ligase subunit beta -
  E3U39_RS17280 (E3U39_17280) ccpN 3427765..3428403 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  E3U39_RS17285 (E3U39_17285) - 3428429..3429241 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=351618 E3U39_RS17265 WP_007408287.1 3423676..3424443(+) (recO) [Bacillus amyloliquefaciens strain FS1092]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=351618 E3U39_RS17265 WP_007408287.1 3423676..3424443(+) (recO) [Bacillus amyloliquefaciens strain FS1092]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAATGAAATTAAACGGGTCATTGATCTGTATTACGAAGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment