Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   E3U39_RS16115 Genome accession   NZ_CP038028
Coordinates   3227428..3228180 (+) Length   250 a.a.
NCBI ID   WP_015417928.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3222428..3233180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS16100 (E3U39_16100) - 3222651..3222842 (-) 192 WP_053573155.1 hypothetical protein -
  E3U39_RS16105 (E3U39_16105) - 3223295..3225937 (+) 2643 WP_020956152.1 valine--tRNA ligase -
  E3U39_RS16110 (E3U39_16110) - 3225996..3227288 (+) 1293 WP_053573156.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  E3U39_RS16115 (E3U39_16115) comC 3227428..3228180 (+) 753 WP_015417928.1 A24 family peptidase Machinery gene
  E3U39_RS16120 (E3U39_16120) - 3228307..3229308 (+) 1002 WP_015417927.1 SPOR domain-containing protein -
  E3U39_RS16125 (E3U39_16125) - 3229449..3230018 (+) 570 WP_015417926.1 Maf family protein -
  E3U39_RS16130 (E3U39_16130) radC 3230050..3230745 (+) 696 WP_007408165.1 DNA repair protein RadC -
  E3U39_RS16135 (E3U39_16135) mreB 3230837..3231850 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  E3U39_RS16140 (E3U39_16140) mreC 3231881..3232744 (+) 864 WP_007408166.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27247.99 Da        Isoelectric Point: 9.4293

>NTDB_id=351611 E3U39_RS16115 WP_015417928.1 3227428..3228180(+) (comC) [Bacillus amyloliquefaciens strain FS1092]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISVGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=351611 E3U39_RS16115 WP_015417928.1 3227428..3228180(+) (comC) [Bacillus amyloliquefaciens strain FS1092]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGTCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTCTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGTCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment