Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GNX12_RS12790 Genome accession   NZ_CP046396
Coordinates   2693167..2693772 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ampC_0069     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2688167..2698772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNX12_RS12760 (GNX12_12760) rsmS 2688869..2689033 (-) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -
  GNX12_RS12765 (GNX12_12765) priC 2689047..2689574 (-) 528 WP_022645282.1 primosomal replication protein N'' -
  GNX12_RS12770 (GNX12_12770) ybaN 2689644..2690021 (+) 378 WP_022645283.1 DUF454 family protein -
  GNX12_RS12775 (GNX12_12775) apt 2690174..2690725 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  GNX12_RS12780 (GNX12_12780) dnaX 2690854..2692785 (+) 1932 WP_022645284.1 DNA polymerase III subunit gamma/tau -
  GNX12_RS12785 (GNX12_12785) ybaB 2692838..2693167 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  GNX12_RS12790 (GNX12_12790) recR 2693167..2693772 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  GNX12_RS12795 (GNX12_12795) htpG 2693882..2695756 (+) 1875 WP_022645285.1 molecular chaperone HtpG -
  GNX12_RS12800 (GNX12_12800) adk 2695937..2696581 (+) 645 WP_001220233.1 adenylate kinase -
  GNX12_RS12805 (GNX12_12805) hemH 2696713..2697675 (+) 963 WP_001250117.1 ferrochelatase -
  GNX12_RS12810 (GNX12_12810) aes 2697672..2698631 (-) 960 WP_001357009.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=351589 GNX12_RS12790 WP_001195025.1 2693167..2693772(+) (recR) [Escherichia coli strain ampC_0069]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=351589 GNX12_RS12790 WP_001195025.1 2693167..2693772(+) (recR) [Escherichia coli strain ampC_0069]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCGCCGCTGGACGGCATCGGTCCGGATGACATCGGCCTTGATCGCCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACATTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443