Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   E3U39_RS07415 Genome accession   NZ_CP038028
Coordinates   1497143..1497580 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1492143..1502580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS07400 (E3U39_07400) - 1495001..1495363 (-) 363 WP_007409352.1 helix-turn-helix domain-containing protein -
  E3U39_RS07405 (E3U39_07405) hxlA 1495595..1496230 (+) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  E3U39_RS07410 (E3U39_07410) hxlB 1496227..1496784 (+) 558 WP_053573744.1 6-phospho-3-hexuloisomerase -
  E3U39_RS07415 (E3U39_07415) nucA/comI 1497143..1497580 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  E3U39_RS07420 (E3U39_07420) nin/comJ 1497601..1497999 (+) 399 WP_020955304.1 competence protein ComJ Regulator
  E3U39_RS07425 (E3U39_07425) - 1498040..1499476 (-) 1437 WP_053573745.1 family 1 glycosylhydrolase -
  E3U39_RS07430 (E3U39_07430) - 1499580..1499903 (-) 324 WP_007409357.1 YckD family protein -
  E3U39_RS07435 (E3U39_07435) - 1499976..1500410 (-) 435 WP_012116767.1 RDD family protein -
  E3U39_RS07440 (E3U39_07440) - 1500425..1501561 (-) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=351580 E3U39_RS07415 WP_003156588.1 1497143..1497580(+) (nucA/comI) [Bacillus amyloliquefaciens strain FS1092]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=351580 E3U39_RS07415 WP_003156588.1 1497143..1497580(+) (nucA/comI) [Bacillus amyloliquefaciens strain FS1092]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment