Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   E3U39_RS04660 Genome accession   NZ_CP038028
Coordinates   965925..966716 (-) Length   263 a.a.
NCBI ID   WP_053573608.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 960925..971716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS04620 (E3U39_04620) - 961194..961529 (-) 336 WP_007408558.1 SdpI family protein -
  E3U39_RS04625 (E3U39_04625) - 961615..962142 (-) 528 WP_015417063.1 SH3 domain-containing protein -
  E3U39_RS04630 (E3U39_04630) - 962270..962539 (-) 270 WP_003155492.1 YfhJ family protein -
  E3U39_RS04635 (E3U39_04635) - 962663..962815 (+) 153 WP_003155495.1 small, acid-soluble spore protein K -
  E3U39_RS04640 (E3U39_04640) - 962963..963874 (+) 912 WP_053573610.1 serine protease -
  E3U39_RS04645 (E3U39_04645) - 963837..964226 (+) 390 WP_053573609.1 DUF2606 family protein -
  E3U39_RS04650 (E3U39_04650) - 964266..965459 (-) 1194 WP_076983409.1 MFS transporter -
  E3U39_RS04655 (E3U39_04655) - 965604..965918 (-) 315 WP_007408553.1 YfhH family protein -
  E3U39_RS04660 (E3U39_04660) recX 965925..966716 (-) 792 WP_053573608.1 recombination regulator RecX Regulator
  E3U39_RS04665 (E3U39_04665) - 966808..967707 (+) 900 WP_039252291.1 TIGR01777 family oxidoreductase -
  E3U39_RS04670 (E3U39_04670) - 967765..967875 (+) 111 WP_003155504.1 YfhE family protein -
  E3U39_RS04675 (E3U39_04675) - 967946..968137 (+) 192 WP_003155508.1 YfhD family protein -
  E3U39_RS04680 (E3U39_04680) - 968177..968761 (-) 585 WP_053573607.1 nitroreductase -
  E3U39_RS04685 (E3U39_04685) - 968838..969722 (-) 885 WP_053573606.1 PhzF family phenazine biosynthesis isomerase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30976.20 Da        Isoelectric Point: 6.0921

>NTDB_id=351575 E3U39_RS04660 WP_053573608.1 965925..966716(-) (recX) [Bacillus amyloliquefaciens strain FS1092]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIKQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=351575 E3U39_RS04660 WP_053573608.1 965925..966716(-) (recX) [Bacillus amyloliquefaciens strain FS1092]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAAACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAGGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGTTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.848

100

0.798

Multiple sequence alignment