Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GNX12_RS05920 Genome accession   NZ_CP046396
Coordinates   1246144..1246659 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain ampC_0069     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1241144..1251659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNX12_RS05875 (GNX12_05880) csrA 1242001..1242186 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  GNX12_RS05905 (GNX12_05910) yqaB 1243374..1243940 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GNX12_RS05910 (GNX12_05915) yqaA 1243937..1244365 (+) 429 WP_001287454.1 YqaA family protein -
  GNX12_RS05915 (GNX12_05920) gshA 1244438..1245994 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  GNX12_RS05920 (GNX12_05925) luxS 1246144..1246659 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  GNX12_RS05925 (GNX12_05930) emrB 1246723..1248261 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  GNX12_RS05930 (GNX12_05935) emrA 1248278..1249450 (-) 1173 WP_022646013.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GNX12_RS05935 (GNX12_05940) emrR 1249577..1250107 (-) 531 WP_000378441.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GNX12_RS05940 (GNX12_05945) ygaH 1250198..1250533 (-) 336 WP_000119759.1 L-valine transporter subunit YgaH -
  GNX12_RS05945 (GNX12_05950) ygaZ 1250523..1251260 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=351567 GNX12_RS05920 WP_001130211.1 1246144..1246659(+) (luxS) [Escherichia coli strain ampC_0069]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=351567 GNX12_RS05920 WP_001130211.1 1246144..1246659(+) (luxS) [Escherichia coli strain ampC_0069]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment