Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   GNX12_RS04005 Genome accession   NZ_CP046396
Coordinates   853462..853938 (-) Length   158 a.a.
NCBI ID   WP_001186786.1    Uniprot ID   -
Organism   Escherichia coli strain ampC_0069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 848462..858938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNX12_RS03965 (GNX12_03970) - 848516..849499 (-) 984 WP_024946586.1 KpsF/GutQ family sugar-phosphate isomerase -
  GNX12_RS03970 (GNX12_03975) - 850310..850480 (-) 171 Protein_791 IS110 family transposase -
  GNX12_RS03975 (GNX12_03980) - 850823..851392 (-) 570 WP_001560692.1 DUF4942 domain-containing protein -
  GNX12_RS03980 (GNX12_03985) - 851489..851686 (-) 198 WP_000839281.1 DUF957 domain-containing protein -
  GNX12_RS03985 (GNX12_03990) - 851698..852186 (-) 489 WP_000777545.1 DUF5983 family protein -
  GNX12_RS03990 (GNX12_03995) - 852183..852557 (-) 375 WP_032333762.1 TA system toxin CbtA family protein -
  GNX12_RS03995 (GNX12_04000) - 852647..853015 (-) 369 WP_001540478.1 type IV toxin-antitoxin system YeeU family antitoxin -
  GNX12_RS04000 (GNX12_04005) - 853178..853399 (-) 222 WP_000692311.1 DUF987 domain-containing protein -
  GNX12_RS04005 (GNX12_04010) radC 853462..853938 (-) 477 WP_001186786.1 RadC family protein Machinery gene
  GNX12_RS04010 (GNX12_04015) - 853954..854439 (-) 486 WP_000214398.1 antirestriction protein -
  GNX12_RS04015 (GNX12_04020) - 854530..855348 (-) 819 WP_001773857.1 DUF932 domain-containing protein -
  GNX12_RS04020 (GNX12_04025) - 855438..855671 (-) 234 WP_001278283.1 DUF905 family protein -
  GNX12_RS04025 (GNX12_04030) - 855677..856354 (-) 678 WP_001097301.1 hypothetical protein -
  GNX12_RS04030 (GNX12_04035) - 856502..857182 (-) 681 WP_032333197.1 WYL domain-containing protein -
  GNX12_RS04035 (GNX12_04040) - 857385..858269 (-) 885 WP_001564055.1 YfjP family GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17776.44 Da        Isoelectric Point: 7.6152

>NTDB_id=351559 GNX12_RS04005 WP_001186786.1 853462..853938(-) (radC) [Escherichia coli strain ampC_0069]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=351559 GNX12_RS04005 WP_001186786.1 853462..853938(-) (radC) [Escherichia coli strain ampC_0069]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment