Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   GNX12_RS03940 Genome accession   NZ_CP046396
Coordinates   841555..842787 (-) Length   410 a.a.
NCBI ID   WP_024946588.1    Uniprot ID   -
Organism   Escherichia coli strain ampC_0069     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 836555..847787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNX12_RS03930 (GNX12_03935) - 839693..840370 (-) 678 WP_024946589.1 ABC transporter ATP-binding protein -
  GNX12_RS03935 (GNX12_03940) - 840367..841146 (-) 780 WP_032152072.1 ABC transporter permease -
  GNX12_RS03940 (GNX12_03945) kpsS 841555..842787 (-) 1233 WP_024946588.1 capsular biosynthesis protein Regulator
  GNX12_RS03945 (GNX12_03950) - 842822..844849 (-) 2028 WP_032333763.1 capsular polysaccharide biosynthesis protein -
  GNX12_RS03950 (GNX12_03955) kdsB 844846..845586 (-) 741 WP_001554265.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GNX12_RS03955 (GNX12_03960) - 845596..847272 (-) 1677 WP_001578965.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 48752.22 Da        Isoelectric Point: 10.0140

>NTDB_id=351558 GNX12_RS03940 WP_024946588.1 841555..842787(-) (kpsS) [Escherichia coli strain ampC_0069]
MQGNALTVLLSGKKYLLLQGPMGPFFNNVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPEWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRREFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNDLDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGESQLHCDTIT
LEINSALNNK

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=351558 GNX12_RS03940 WP_024946588.1 841555..842787(-) (kpsS) [Escherichia coli strain ampC_0069]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TAACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAACGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGAATGGTTACGGGATCTCCATCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGACCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAATTTAAAACCTTCAACGATG
AAACGTATTGGCCATGCAATGTGGTATTACCTGATGGGCTGGCATTACCGTCGTGAGTTTCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGACCTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAAATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
GAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGGGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCATGCAAAAGCGGTGGTA
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTAACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTTAAGACACAGGTTAATGGGGTTTATTATGGGGAGTCACAGTTACACTGCGACACTATTACA
TTAGAAATCAATTCTGCATTGAACAATAAATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.103

94.878

0.38

Multiple sequence alignment