Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E1742_RS25585 Genome accession   NZ_CP038026
Coordinates   5802730..5804103 (+) Length   457 a.a.
NCBI ID   WP_134387825.1    Uniprot ID   -
Organism   Pseudoduganella plicata strain DSM 17505     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5797730..5809103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1742_RS25560 (E1742_25560) rimI 5797749..5798237 (+) 489 WP_229466351.1 ribosomal protein S18-alanine N-acetyltransferase -
  E1742_RS25565 (E1742_25565) - 5798234..5799205 (+) 972 WP_134387821.1 uracil-DNA glycosylase -
  E1742_RS25570 (E1742_25570) - 5799189..5800178 (+) 990 WP_134387822.1 DUF1853 family protein -
  E1742_RS25575 (E1742_25575) lplT 5800182..5801444 (-) 1263 WP_134387823.1 lysophospholipid transporter LplT -
  E1742_RS25580 (E1742_25580) alr 5801596..5802702 (+) 1107 WP_134387824.1 alanine racemase -
  E1742_RS25585 (E1742_25585) radA 5802730..5804103 (+) 1374 WP_134387825.1 DNA repair protein RadA Machinery gene
  E1742_RS25590 (E1742_25590) - 5804138..5804461 (+) 324 WP_229466352.1 PilZ domain-containing protein -
  E1742_RS25595 (E1742_25595) fliD 5804556..5805944 (+) 1389 WP_229466354.1 flagellar filament capping protein FliD -
  E1742_RS25600 (E1742_25600) - 5806078..5807127 (-) 1050 WP_229466356.1 patatin-like phospholipase family protein -
  E1742_RS27115 - 5807347..5807469 (-) 123 WP_259772418.1 hypothetical protein -
  E1742_RS25605 (E1742_25605) sixA 5807597..5808058 (-) 462 WP_134387827.1 phosphohistidine phosphatase SixA -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48781.24 Da        Isoelectric Point: 7.7229

>NTDB_id=351544 E1742_RS25585 WP_134387825.1 5802730..5804103(+) (radA) [Pseudoduganella plicata strain DSM 17505]
MAKAKTNYTCSECGGTTNKWTGQCPACRQWNTMVETVVESAGNNRLSQGHQALAQTAPVLSLHEIEALDVPRFGTGIEEF
DRVLGGGLVAGGVVLIGGDPGIGKSTLLLQALAEMSRARSVLYVSGEESGAQIALRAKRLAIDAKDFKLQAEIQLEKILG
TLADVKPQVAVIDSIQTLYSDALTSAPGSVAQVRECAAQLTRVAKQTGVTIILVGHVTKEGALAGPRVLEHIVDTVLYFE
GDSHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDASHLP
NARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKPLPRGFVVFGEVGLAG
EIRPAPRGQERLREATKLGFSIAMIPKANAPKQPIEGMTIIAVDRIDDAFNRLRELQ

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=351544 E1742_RS25585 WP_134387825.1 5802730..5804103(+) (radA) [Pseudoduganella plicata strain DSM 17505]
ATGGCAAAAGCAAAGACGAATTACACATGCAGCGAATGCGGCGGCACCACCAACAAATGGACGGGCCAGTGCCCCGCGTG
CCGGCAGTGGAACACGATGGTGGAAACCGTCGTCGAGAGCGCCGGCAACAACCGGCTGTCGCAGGGCCACCAGGCGCTGG
CGCAGACGGCGCCCGTGCTGTCGCTGCACGAGATCGAGGCGCTCGACGTGCCCCGTTTCGGTACGGGCATCGAGGAGTTC
GACCGTGTGCTGGGCGGCGGGCTGGTGGCGGGCGGCGTCGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCGACGCT
GCTGCTGCAGGCGCTGGCGGAGATGTCGCGCGCGCGCAGCGTGCTGTACGTGTCGGGCGAGGAGTCCGGCGCGCAGATCG
CGCTGCGGGCGAAACGGCTCGCCATCGATGCGAAGGACTTCAAGCTGCAGGCCGAGATCCAGCTGGAGAAGATTCTCGGC
ACGCTGGCCGACGTCAAGCCGCAGGTGGCCGTCATCGACTCGATCCAGACGCTGTATTCGGATGCGCTGACCTCGGCCCC
CGGTTCCGTGGCCCAGGTACGCGAGTGCGCGGCCCAGCTGACGCGGGTGGCCAAGCAGACGGGCGTGACGATCATCCTCG
TTGGCCACGTGACGAAGGAAGGCGCGCTGGCGGGGCCGCGCGTGCTGGAACACATCGTCGACACGGTGCTGTACTTCGAA
GGCGACAGCCATTCCAGCTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTCGGCGCCGTCAACGAGCTTGGCGTGTTTGC
CATGACGGAAAAGGGCCTGAAGGGCGTATCGAATCCATCCGCGCTGTTCCTGTCGCAGCACGACAACCAGGTGCCCGGAT
CCTGCGTGATGGTGACCCAGGAGGGCACGCGTCCGCTGCTCGTCGAGATCCAGGCGCTGGTCGATGCCAGCCACCTGCCG
AACGCGCGCCGGCTGTCCGTCGGCCTGGAACAGAACCGGCTGGCGATGCTGCTGGCCGTGCTGCACCGGCACGCCGGCAT
CGCCGCGTTTGACCAGGATGTGTTCATCAATGCCGTCGGTGGCGTGAAGATCACGGAGCCGGCGGCCGACCTGGCCGTGC
TGCTGGCGATTAACTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGGTTTGTCGTATTTGGCGAAGTGGGCCTGGCGGGC
GAAATCCGTCCCGCGCCGCGCGGCCAGGAGCGCCTGCGCGAGGCAACCAAGCTGGGCTTCTCGATTGCCATGATCCCGAA
AGCGAACGCGCCGAAGCAGCCCATCGAAGGGATGACGATCATCGCCGTCGACCGCATCGACGATGCGTTCAACCGCTTGC
GCGAATTGCAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.148

100

0.484
  radA Streptococcus mitis SK321

46.491

99.781

0.464
  radA Streptococcus mitis NCTC 12261

46.374

99.562

0.462
  radA Streptococcus pneumoniae TIGR4

47.619

96.499

0.46
  radA Streptococcus pneumoniae R6

47.619

96.499

0.46
  radA Streptococcus pneumoniae Rx1

47.619

96.499

0.46
  radA Streptococcus pneumoniae D39

47.619

96.499

0.46

Multiple sequence alignment