Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   E1742_RS12150 Genome accession   NZ_CP038026
Coordinates   2798096..2798491 (-) Length   131 a.a.
NCBI ID   WP_134385119.1    Uniprot ID   -
Organism   Pseudoduganella plicata strain DSM 17505     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2793096..2803491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1742_RS12135 (E1742_12135) - 2794754..2796940 (-) 2187 WP_134388142.1 methyl-accepting chemotaxis protein -
  E1742_RS12140 (E1742_12140) - 2797111..2797716 (-) 606 WP_134385115.1 chemotaxis protein CheW -
  E1742_RS12145 (E1742_12145) - 2797717..2798079 (-) 363 WP_134385117.1 response regulator transcription factor -
  E1742_RS12150 (E1742_12150) pilG 2798096..2798491 (-) 396 WP_134385119.1 PleD family two-component system response regulator Regulator
  E1742_RS12155 (E1742_12155) - 2798695..2798847 (-) 153 WP_134385121.1 rubredoxin -
  E1742_RS12160 (E1742_12160) - 2798955..2799887 (+) 933 WP_134385123.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  E1742_RS12165 (E1742_12165) hemL 2799884..2801176 (+) 1293 WP_134385125.1 glutamate-1-semialdehyde 2,1-aminomutase -
  E1742_RS12170 (E1742_12170) - 2801378..2802646 (+) 1269 WP_134385127.1 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14215.45 Da        Isoelectric Point: 7.9062

>NTDB_id=351527 E1742_RS12150 WP_134385119.1 2798096..2798491(-) (pilG) [Pseudoduganella plicata strain DSM 17505]
MTTTPQATGMKIMVIDDSSTIRRSAEIFLSQAGYQVVLAEDGFDALAKINDHHPALIFCDILMPRLDGYQTCALIKKSAK
FHAVPVLMLSSRDGLFDRARGAMVGSSAYLTKPFSKDSLLAAVREHTGPGQ

Nucleotide


Download         Length: 396 bp        

>NTDB_id=351527 E1742_RS12150 WP_134385119.1 2798096..2798491(-) (pilG) [Pseudoduganella plicata strain DSM 17505]
ATGACGACAACGCCGCAAGCGACAGGTATGAAAATCATGGTGATCGACGACAGCAGTACCATCCGCCGGTCCGCCGAGAT
TTTCCTCAGCCAGGCCGGCTACCAGGTCGTGCTGGCCGAAGACGGCTTTGACGCGCTTGCCAAGATCAACGACCACCATC
CGGCCCTGATCTTCTGCGACATCCTGATGCCCCGGCTGGACGGTTACCAGACCTGCGCGCTGATCAAGAAGAGTGCGAAA
TTCCATGCCGTTCCGGTGCTGATGCTGTCCTCCCGGGACGGCCTGTTCGACCGCGCGCGCGGCGCCATGGTCGGCTCGTC
GGCCTATCTGACCAAACCCTTCAGCAAAGACAGCCTGCTGGCCGCCGTGCGCGAGCACACCGGCCCGGGCCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

61.345

90.84

0.557

Multiple sequence alignment