Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CAP2UW1_RS13205 Genome accession   NC_013194
Coordinates   3048642..3050018 (-) Length   458 a.a.
NCBI ID   WP_015767120.1    Uniprot ID   A0A9D8PVA0
Organism   Candidatus Accumulibacter phosphatis     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3043642..3055018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAP2UW1_RS13185 (CAP2UW1_2645) - 3044943..3045818 (-) 876 WP_199931463.1 hypothetical protein -
  CAP2UW1_RS13190 (CAP2UW1_2646) - 3045883..3046464 (-) 582 WP_015767117.1 TerD family protein -
  CAP2UW1_RS13195 (CAP2UW1_2647) - 3046546..3047250 (-) 705 WP_015767118.1 VWA domain-containing protein -
  CAP2UW1_RS13200 (CAP2UW1_2648) - 3047263..3048390 (-) 1128 WP_015767119.1 toxic anion resistance protein -
  CAP2UW1_RS13205 (CAP2UW1_2649) radA 3048642..3050018 (-) 1377 WP_015767120.1 DNA repair protein RadA Machinery gene
  CAP2UW1_RS13210 (CAP2UW1_2650) alr 3050021..3051124 (-) 1104 WP_015767121.1 alanine racemase -
  CAP2UW1_RS13215 (CAP2UW1_2651) - 3051124..3052026 (-) 903 WP_015767122.1 LysR family transcriptional regulator -
  CAP2UW1_RS13220 (CAP2UW1_2652) lplT 3052220..3053482 (+) 1263 WP_015767123.1 lysophospholipid transporter LplT -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48505.99 Da        Isoelectric Point: 8.1080

>NTDB_id=35152 CAP2UW1_RS13205 WP_015767120.1 3048642..3050018(-) (radA) [Candidatus Accumulibacter phosphatis]
MARAPGSQKTVFACSECGASTAKWQGQCPGCGVWNTLVESVAEPAAGSPRRFAALGGTSGLQSLSEIEARAEDRLPTGIG
EFDRALGGGLVSGGVVLIGGDPGIGKSTLLLQALSSMCLTRTVLYVSGEESGQQIAMRARRLSLETRRLGFLAEINLEKI
VAALQSAKPQVAVIDSIQTLWSEQLNSAPGSVAQVRECAAQLTRLAKQTGITVILVGHVTKEGALAGPRVLEHIVDTVLY
FEGDTHSSFRLIRAVKNRYGAVNEIGVFAMTDRGLKGVSNPSAIFLSQHGTDVAGSCVLVTQEGTRPMLVEIQALVDQAH
GNPRRLTVGLDAQRLAMLLAVLHRHAGIVCFDQDVFVNAVGGVKIGEPAADLAVLLAIISSLKNRALPAKLIVFGEVGLA
GEIRPAPRGQERLKEAAKLGFTRAMIPEANKPRQAIADIEVLAVRRVEEAVERLRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=35152 CAP2UW1_RS13205 WP_015767120.1 3048642..3050018(-) (radA) [Candidatus Accumulibacter phosphatis]
ATGGCGCGCGCGCCGGGCAGTCAGAAGACGGTTTTCGCGTGCAGCGAGTGCGGCGCCAGCACCGCCAAGTGGCAGGGGCA
ATGCCCCGGCTGCGGCGTCTGGAACACGCTCGTCGAGAGCGTTGCCGAACCGGCGGCCGGTAGCCCGAGGCGCTTTGCTG
CCCTGGGTGGCACTAGCGGGCTGCAGAGCCTCTCCGAGATCGAAGCGCGCGCCGAGGACCGCTTGCCCACCGGCATCGGC
GAGTTCGATCGCGCTCTCGGCGGCGGGCTGGTCAGCGGTGGTGTCGTGCTGATCGGCGGCGATCCGGGAATCGGCAAGAG
CACCTTGCTGTTGCAGGCGCTGTCGTCGATGTGCCTGACCCGCACGGTGCTCTACGTCAGCGGCGAGGAATCCGGTCAGC
AGATCGCGATGCGCGCGCGGCGCCTGTCGCTGGAGACACGGCGGCTCGGTTTTCTCGCCGAAATCAATCTCGAGAAGATC
GTCGCGGCGCTGCAGTCCGCAAAACCACAGGTGGCGGTCATCGACTCGATCCAGACCCTGTGGTCGGAGCAACTCAACTC
GGCGCCGGGCTCGGTCGCCCAGGTCCGGGAATGTGCGGCGCAGCTTACCCGCCTCGCCAAACAGACCGGGATCACCGTGA
TCCTCGTCGGTCACGTGACCAAGGAGGGCGCGCTGGCCGGGCCGCGCGTGCTCGAACACATCGTCGACACGGTGCTCTAT
TTCGAAGGCGACACGCATTCGAGCTTCCGCCTGATCCGCGCGGTCAAGAATCGGTATGGCGCGGTCAATGAAATCGGCGT
CTTTGCGATGACCGACAGGGGGCTGAAGGGCGTCAGCAACCCCTCGGCCATCTTCCTGTCACAGCACGGGACCGATGTTG
CCGGGTCCTGCGTGCTGGTCACCCAGGAAGGCACGCGTCCCATGCTGGTCGAGATCCAGGCCCTCGTCGATCAGGCGCAC
GGCAACCCGCGACGGCTGACCGTCGGCCTCGATGCGCAGCGGCTGGCGATGCTCCTGGCGGTCCTGCACCGGCACGCCGG
AATCGTCTGCTTCGATCAGGACGTCTTCGTCAACGCCGTCGGCGGCGTCAAGATCGGCGAGCCGGCGGCCGACTTGGCGG
TCTTGCTGGCGATCATTTCTTCATTGAAAAACAGAGCGTTGCCGGCGAAGCTTATCGTGTTTGGCGAAGTCGGGCTGGCA
GGTGAGATCCGTCCCGCGCCGCGTGGCCAGGAGCGTCTCAAGGAGGCAGCGAAGCTCGGTTTCACGCGCGCGATGATTCC
CGAGGCCAACAAACCCCGCCAGGCCATTGCCGACATCGAGGTGCTTGCCGTGCGACGGGTCGAGGAAGCGGTCGAGCGTC
TGCGCGATCTCGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(12-39)

AAA domain (AAA_25)

(85-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.007

98.908

0.485
  radA Streptococcus mitis SK321

46.018

98.69

0.454
  radA Streptococcus mitis NCTC 12261

45.695

98.908

0.452
  radA Streptococcus pneumoniae TIGR4

46.102

98.035

0.452
  radA Streptococcus pneumoniae R6

46.102

98.035

0.452
  radA Streptococcus pneumoniae Rx1

46.102

98.035

0.452
  radA Streptococcus pneumoniae D39

46.102

98.035

0.452

Multiple sequence alignment