Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   E3H47_RS12095 Genome accession   NZ_CP038022
Coordinates   2586106..2586984 (-) Length   292 a.a.
NCBI ID   WP_138000886.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain DD78     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2581106..2591984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS12075 (E3H47_12080) miaB 2582537..2583994 (+) 1458 WP_005407104.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  E3H47_RS12080 (E3H47_12085) - 2584033..2585130 (+) 1098 WP_005018410.1 PhoH family protein -
  E3H47_RS12085 (E3H47_12090) ybeY 2585139..2585618 (+) 480 WP_138000885.1 rRNA maturation RNase YbeY -
  E3H47_RS12090 (E3H47_12095) - 2585716..2586090 (+) 375 WP_373866262.1 hypothetical protein -
  E3H47_RS12095 (E3H47_12100) tonB2 2586106..2586984 (-) 879 WP_138000886.1 energy transducer TonB Machinery gene
  E3H47_RS12100 (E3H47_12105) - 2587228..2587908 (+) 681 WP_005024481.1 hypothetical protein -
  E3H47_RS12105 (E3H47_12110) - 2588076..2588789 (+) 714 WP_005024479.1 DUF3108 domain-containing protein -
  E3H47_RS12110 (E3H47_12115) - 2588882..2589457 (+) 576 WP_034669941.1 xanthine phosphoribosyltransferase -
  E3H47_RS12115 (E3H47_12120) wrbA 2589496..2590089 (-) 594 WP_005018403.1 NAD(P)H:quinone oxidoreductase -
  E3H47_RS12120 (E3H47_12125) - 2590202..2591446 (+) 1245 WP_005024473.1 YhjD/YihY/BrkB family envelope integrity protein -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32823.37 Da        Isoelectric Point: 8.3816

>NTDB_id=351510 E3H47_RS12095 WP_138000886.1 2586106..2586984(-) (tonB2) [Acinetobacter radioresistens strain DD78]
MLKKIILPGGTGLAWWQDPIFMGALLLAVILHSAILTLHFAMPDPEAAASKEIAVSIRPSSEQVKDADYLAQADQQGSGR
FREAHRISSQLPASSQQQSAGEQQETLQQMHQQPQIQFEDKVLMTIMSWRKEAEQNQRKKALEELQSQFQAKAAMAASLE
AQYLQRQQDFSRQQRIKTVDGIQAKQDAAAAYLDKFREKVELYGNRYYPQQAKAERLTGEVQLIVILNAQGGIRAIRLLE
SSGHTILDEAAKASVRKGAPFGRFDAGMKDISELRIVRTWRFDPAEAEFEVK

Nucleotide


Download         Length: 879 bp        

>NTDB_id=351510 E3H47_RS12095 WP_138000886.1 2586106..2586984(-) (tonB2) [Acinetobacter radioresistens strain DD78]
ATGTTGAAAAAAATAATTTTACCTGGTGGGACAGGTCTGGCTTGGTGGCAGGATCCGATTTTTATGGGTGCTCTGTTGCT
GGCTGTCATTTTACATTCGGCGATTTTAACTCTGCATTTTGCAATGCCAGATCCAGAGGCTGCTGCCAGTAAGGAAATCG
CTGTCAGCATTCGTCCGAGTTCTGAGCAGGTCAAAGATGCCGACTATTTGGCACAGGCAGACCAGCAGGGTTCAGGCCGC
TTTCGAGAGGCTCACCGTATCTCAAGCCAGCTACCGGCCAGTTCACAACAACAGAGTGCGGGTGAGCAGCAGGAGACTTT
ACAGCAGATGCACCAACAGCCTCAAATACAGTTTGAAGACAAAGTCCTGATGACAATCATGAGCTGGCGCAAAGAAGCGG
AGCAAAACCAGCGTAAAAAGGCTTTAGAAGAATTACAGAGCCAGTTTCAGGCTAAGGCAGCAATGGCTGCCAGTCTGGAA
GCCCAGTATTTACAGCGTCAGCAGGATTTCAGCCGTCAGCAACGTATCAAAACGGTGGATGGAATTCAGGCCAAGCAGGA
TGCAGCAGCTGCCTATCTGGACAAGTTTCGTGAAAAAGTTGAACTCTATGGTAACCGCTATTATCCGCAGCAAGCTAAGG
CTGAGCGCCTAACAGGAGAAGTGCAGCTTATAGTCATCCTGAATGCTCAAGGCGGGATACGTGCAATCCGGTTGCTGGAA
AGCTCAGGGCATACCATTCTAGATGAGGCAGCCAAGGCTTCTGTACGTAAAGGTGCGCCATTTGGGCGGTTTGATGCAGG
TATGAAAGATATTTCTGAACTACGCATTGTACGGACGTGGCGATTCGACCCGGCCGAGGCTGAATTCGAAGTAAAATAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.014

100

0.723

Multiple sequence alignment