Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   E3H47_RS05605 Genome accession   NZ_CP038022
Coordinates   1191868..1192821 (+) Length   317 a.a.
NCBI ID   WP_138000654.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain DD78     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1186868..1197821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS05580 (E3H47_05580) - 1187805..1188407 (+) 603 WP_171462109.1 AAA family ATPase -
  E3H47_RS05585 (E3H47_05585) - 1188419..1189399 (+) 981 WP_171462110.1 AAA family ATPase -
  E3H47_RS05590 (E3H47_05590) - 1189392..1190420 (+) 1029 WP_171462111.1 DUF4435 domain-containing protein -
  E3H47_RS05595 (E3H47_05595) - 1190615..1190806 (+) 192 WP_228263145.1 hypothetical protein -
  E3H47_RS05600 (E3H47_05600) - 1190931..1191416 (-) 486 WP_005014761.1 Lrp/AsnC family transcriptional regulator -
  E3H47_RS05605 (E3H47_05605) ceuB 1191868..1192821 (+) 954 WP_138000654.1 ABC transporter permease Machinery gene
  E3H47_RS05610 (E3H47_05610) - 1192814..1193776 (+) 963 WP_005025524.1 iron chelate uptake ABC transporter family permease subunit -
  E3H47_RS05615 (E3H47_05615) - 1193761..1194525 (+) 765 WP_138000655.1 ABC transporter ATP-binding protein -
  E3H47_RS05620 (E3H47_05620) - 1194535..1195482 (+) 948 WP_138000656.1 siderophore ABC transporter substrate-binding protein -
  E3H47_RS05625 (E3H47_05625) - 1195784..1196992 (-) 1209 WP_138000657.1 MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34608.73 Da        Isoelectric Point: 9.6461

>NTDB_id=351499 E3H47_RS05605 WP_138000654.1 1191868..1192821(+) (ceuB) [Acinetobacter radioresistens strain DD78]
MIKRRYLFLLLVPLAVISLFTGVGEMNITGLLTGNIHEWQLFWTSRLPRLMAILVAGAGLSVCGLIMQSLSRNRFVSPTT
AGLYDCARLGVLISIILLPAASIFIKTGFAILVTLAGALVFMSILATLKHRDTVFVPLVGMIFGSIISAFTTFIALQMDL
LQNLAGWLQGDFSTVLNGQYELIYLSVPILIVSYFLANRFVLAGIGEDFATNLGLNYKQTLFLGLVLVSVITGVVIVTVG
AIPFLGLIVPNIVSLYLGDNIRKTLSHTAILGALLVLVCDLFGRIVIYPYEVSVSLIMGVLGSVLFLWLLLRRYRYA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=351499 E3H47_RS05605 WP_138000654.1 1191868..1192821(+) (ceuB) [Acinetobacter radioresistens strain DD78]
ATGATTAAACGCCGTTACCTGTTTCTTTTGCTTGTTCCTCTTGCTGTTATTTCGTTATTTACAGGTGTGGGCGAAATGAA
TATTACCGGATTACTGACAGGCAATATTCATGAATGGCAATTATTCTGGACCAGCCGTTTACCACGCTTAATGGCCATTT
TAGTTGCAGGTGCAGGGCTGAGTGTTTGTGGGCTGATTATGCAGTCACTCAGCCGGAACCGTTTTGTTTCCCCAACTACA
GCCGGTCTTTATGATTGTGCCCGGTTAGGTGTTCTCATCTCGATTATCCTGTTGCCAGCCGCTTCTATTTTTATTAAAAC
CGGTTTTGCAATTTTAGTTACATTGGCCGGTGCATTGGTTTTTATGAGTATTCTAGCCACACTCAAGCATCGGGATACCG
TTTTTGTTCCTCTGGTTGGTATGATCTTTGGCAGTATTATTTCTGCATTTACGACTTTTATCGCTTTGCAAATGGACTTG
TTACAAAATCTGGCGGGATGGTTACAGGGAGACTTTTCAACCGTTCTAAATGGTCAATATGAGCTGATCTATTTAAGTGT
ACCCATTTTAATAGTGAGTTATTTTCTGGCCAATCGCTTTGTGCTGGCAGGTATCGGAGAAGACTTTGCAACTAATTTAG
GCCTCAATTATAAACAGACCTTATTTTTAGGACTAGTTCTGGTATCTGTCATTACTGGTGTAGTCATCGTCACAGTTGGA
GCTATCCCATTCTTAGGTTTGATTGTTCCCAATATTGTAAGTCTGTATCTCGGAGATAATATCCGCAAGACTTTATCGCA
TACTGCAATTTTAGGGGCTTTATTGGTACTGGTCTGTGATCTGTTTGGACGTATAGTGATTTATCCGTACGAAGTTTCAG
TAAGTCTGATTATGGGTGTACTGGGCAGTGTGCTTTTCTTGTGGCTCTTGCTACGGAGGTACCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.118

98.738

0.505

Multiple sequence alignment