Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   E3H47_RS01425 Genome accession   NZ_CP038022
Coordinates   312496..314721 (-) Length   741 a.a.
NCBI ID   WP_026444086.1    Uniprot ID   A0A3D3G302
Organism   Acinetobacter radioresistens strain DD78     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307496..319721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS01405 (E3H47_01405) - 307760..308713 (-) 954 WP_005405721.1 DnaJ C-terminal domain-containing protein -
  E3H47_RS01410 (E3H47_01410) - 308869..309330 (-) 462 WP_005405863.1 DUF2147 domain-containing protein -
  E3H47_RS01415 (E3H47_01415) - 309655..310530 (-) 876 WP_138000439.1 Hsp33 family molecular chaperone HslO -
  E3H47_RS01420 (E3H47_01420) - 310580..312412 (-) 1833 WP_026444085.1 cation:proton antiporter -
  E3H47_RS01425 (E3H47_01425) priA 312496..314721 (-) 2226 WP_026444086.1 primosomal protein N' Machinery gene
  E3H47_RS01430 (E3H47_01430) gspF 314877..316082 (+) 1206 WP_026444087.1 type II secretion system inner membrane protein GspF -
  E3H47_RS01435 (E3H47_01435) gspG 316120..316557 (+) 438 WP_026444088.1 type II secretion system major pseudopilin GspG -
  E3H47_RS01440 (E3H47_01440) - 316894..317229 (+) 336 WP_005023139.1 hypothetical protein -
  E3H47_RS01445 (E3H47_01445) lnt 317307..318866 (-) 1560 WP_005023142.1 apolipoprotein N-acyltransferase -
  E3H47_RS01450 (E3H47_01450) - 318863..319702 (-) 840 WP_005016900.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84166.36 Da        Isoelectric Point: 9.1601

>NTDB_id=351491 E3H47_RS01425 WP_026444086.1 312496..314721(-) (priA) [Acinetobacter radioresistens strain DD78]
MPSSSHNNCCIYRVRVAVPVHLYDSFDYLLSAEQYLQAEVGARVAVSFGRQNLIGIIVEKISPDVMPDPRIKLKAITELL
DKEAIIDSKVLSLLTWSAQYYQFPLGEVMQCALPGLLRQGKPLNLLARVWKVVQPDAEQLLKRSIKQQDAYKILKLHAAG
TTEDILNLSGVETATLKALEKKEIVRCELTAINTTPEPVQLAQMPLTPNEDQHKAIQRILKSLKKFQAFLLDGLTGSGKT
EVYLQVMYEVLKQGKQILVLVPEIGLTPQTISRFKSRFNVDIVLLHSGLSESKRLQAWQHAQTGKASIILGTRSAIYTSL
PRLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSLDSYHLVEQNKLTRLELNQRAGNAVLPKMQL
IDLKVAKKQHGISEQLIKQIQQRLDKKEQVLVFLNRRGYAPVLVCNHCGWQANCPHCDAHFTLHTQPYNHLHCHHCGSIH
RVPESCPECQQTTLKTLGMGTAKVEETLTELFPDFDVIRVDRDSTSRVGQWDRIYQRIHQSQPAILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSFDFRAPERTAQLIIQVAGRAGRGDRRGEVYLQTLRPDHPLLTTLIEKDYRAFAKQALIERQQAQL
PPYRYTVLVRADSRNQQYSQEFLAEIARKLRELAGSQVDIWGPIPAPMERKAGRYRAHLVLLSADRAQLHFYLRQWWAMV
VQQSRQHQLKLSIDVDPQELS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=351491 E3H47_RS01425 WP_026444086.1 312496..314721(-) (priA) [Acinetobacter radioresistens strain DD78]
ATGCCTAGCTCGTCCCATAATAACTGCTGTATATACCGTGTCCGGGTAGCTGTACCTGTTCATCTCTATGATAGTTTTGA
CTATCTGCTTAGTGCCGAACAATACTTACAGGCAGAAGTCGGTGCGCGGGTAGCAGTATCTTTTGGACGGCAAAATCTGA
TTGGTATCATTGTAGAGAAAATTTCTCCCGATGTTATGCCTGATCCGCGTATCAAACTTAAGGCTATTACTGAGCTGCTC
GACAAGGAAGCCATTATAGACAGCAAAGTTTTAAGTTTGTTGACATGGTCTGCGCAGTATTATCAATTTCCTTTGGGTGA
GGTAATGCAATGTGCTCTACCCGGCCTGTTGCGTCAGGGTAAACCGCTAAATCTGCTGGCTCGAGTCTGGAAGGTGGTAC
AGCCTGATGCAGAACAGCTGCTCAAGCGTTCAATCAAGCAGCAAGATGCTTATAAGATTTTAAAATTACATGCAGCCGGT
ACAACAGAAGATATTCTGAATTTAAGTGGTGTTGAAACTGCCACTTTAAAAGCTCTTGAAAAAAAAGAAATTGTCCGCTG
TGAATTAACAGCAATAAATACCACGCCTGAACCGGTGCAGCTGGCACAAATGCCACTCACACCCAATGAAGATCAGCACA
AAGCAATTCAGCGTATTTTAAAATCCTTGAAGAAATTTCAGGCCTTCTTACTTGATGGTTTGACTGGTAGCGGCAAAACA
GAAGTTTATTTGCAGGTGATGTACGAGGTACTAAAACAGGGCAAGCAGATATTGGTTCTGGTTCCCGAAATCGGGTTGAC
ACCTCAAACCATTTCCCGTTTTAAATCACGGTTTAATGTAGATATTGTACTATTACATTCTGGTTTGAGTGAATCCAAAC
GTTTGCAAGCATGGCAGCATGCCCAAACCGGCAAGGCTTCCATTATTCTCGGAACCCGCTCAGCAATTTATACGTCGTTG
CCCCGGCTGGGACTGATTATTCTGGATGAGGAGCATGATCTGTCATTCAAGCAACAGGAAGGCTTTCGCTACCATGCCCG
TGACGTAGCTCTCTACCGTGCCCATCTGGAAAACTGTCCGATTATTCTTGGCTCAGCCACACCCAGTCTGGATAGCTATC
ATCTGGTAGAACAGAATAAACTGACACGACTGGAACTTAACCAGCGGGCTGGCAATGCGGTCTTACCCAAAATGCAGTTA
ATAGATCTGAAAGTAGCCAAAAAACAGCATGGAATTAGTGAACAGCTCATCAAGCAGATTCAGCAGCGGCTGGACAAAAA
AGAACAGGTGCTGGTTTTTTTAAACCGGCGTGGTTATGCGCCGGTACTGGTCTGTAATCATTGTGGCTGGCAGGCCAACT
GCCCCCATTGTGATGCGCATTTTACTCTGCATACACAGCCCTATAATCATCTGCACTGTCATCATTGTGGTTCCATTCAT
CGTGTACCGGAAAGCTGTCCCGAATGTCAGCAAACGACCTTAAAAACGCTCGGGATGGGCACTGCCAAGGTTGAAGAAAC
CCTGACCGAGCTCTTTCCAGATTTTGATGTAATTCGTGTGGACCGTGACAGTACCAGCCGGGTTGGCCAATGGGACCGTA
TCTATCAGCGGATTCATCAAAGCCAGCCTGCTATTTTACTCGGTACCCAAATGTTAGCCAAGGGCCATCATTTTCCCTAC
GTGACCTTGGTTGCGATTCTGGATATTGATGCCGGACTGCTCAGCTTTGATTTTCGTGCGCCGGAACGTACAGCCCAGCT
CATCATTCAGGTGGCTGGTCGTGCTGGCCGTGGAGACCGCAGAGGCGAAGTCTATCTGCAAACTTTAAGGCCTGATCATC
CACTGTTAACTACATTGATCGAGAAAGACTACCGTGCTTTTGCCAAACAAGCACTCATTGAGCGCCAGCAGGCACAGCTG
CCGCCTTATCGTTATACGGTACTGGTACGAGCCGACTCCAGAAACCAGCAATACAGTCAGGAATTTTTAGCTGAAATTGC
TCGTAAGCTACGTGAACTTGCAGGTAGTCAGGTTGATATCTGGGGCCCTATCCCTGCCCCTATGGAGCGTAAGGCGGGTC
GCTATCGGGCCCATCTGGTCCTGCTTTCGGCTGACCGGGCACAGCTGCATTTTTATTTACGGCAATGGTGGGCGATGGTA
GTACAACAGTCACGACAGCATCAGTTAAAGCTGAGTATCGACGTTGACCCGCAGGAACTCAGCTAG

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

Type III restriction enzyme, res subunit (ResIII)

(207-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3D3G302

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

75.782

99.19

0.752

Multiple sequence alignment