Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   GL187_RS02705 Genome accession   NZ_CP046379
Coordinates   526256..526522 (+) Length   88 a.a.
NCBI ID   WP_001808618.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 563     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 521256..531522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL187_RS02685 (GL187_02760) - 521468..521977 (+) 510 WP_000619943.1 GNAT family N-acetyltransferase -
  GL187_RS02690 (GL187_02765) pheT 522054..524459 (+) 2406 WP_061714000.1 phenylalanine--tRNA ligase subunit beta -
  GL187_RS02695 (GL187_02770) - 524527..525528 (-) 1002 WP_024477913.1 endonuclease/exonuclease/phosphatase family protein -
  GL187_RS02700 (GL187_02775) - 525684..526172 (+) 489 Protein_539 transposase -
  GL187_RS02705 (GL187_02780) HI0659 526256..526522 (+) 267 WP_001808618.1 helix-turn-helix domain-containing protein Machinery gene
  GL187_RS02710 (GL187_02785) metE 526783..529032 (+) 2250 WP_024477912.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  GL187_RS02715 (GL187_02790) metF 529096..529962 (+) 867 WP_000089976.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9622.15 Da        Isoelectric Point: 4.4893

>NTDB_id=351446 GL187_RS02705 WP_001808618.1 526256..526522(+) (HI0659) [Streptococcus pneumoniae strain 563]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=351446 GL187_RS02705 WP_001808618.1 526256..526522(+) (HI0659) [Streptococcus pneumoniae strain 563]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534