Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GL187_RS01815 Genome accession   NZ_CP046379
Coordinates   352887..353483 (-) Length   198 a.a.
NCBI ID   WP_000248787.1    Uniprot ID   H8ZYP5
Organism   Streptococcus pneumoniae strain 563     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 347887..358483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL187_RS01810 (GL187_01880) pbp1a 350725..352890 (-) 2166 WP_024477742.1 penicillin-binding protein PBP1A -
  GL187_RS01815 (GL187_01885) recU 352887..353483 (-) 597 WP_000248787.1 Holliday junction resolvase RecU Machinery gene
  GL187_RS01820 (GL187_01890) - 353549..354076 (+) 528 WP_000179549.1 DUF1273 domain-containing protein -
  GL187_RS01825 (GL187_01895) gpsB 354146..354475 (+) 330 WP_000146522.1 cell division regulator GpsB -
  GL187_RS01835 (GL187_01905) - 354961..356118 (+) 1158 WP_000711372.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  GL187_RS01840 (GL187_01910) mapZ 356131..357525 (+) 1395 WP_032495864.1 cell division site-positioning protein MapZ -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23130.53 Da        Isoelectric Point: 9.8515

>NTDB_id=351437 GL187_RS01815 WP_000248787.1 352887..353483(-) (recU) [Streptococcus pneumoniae strain 563]
MVNYPHKVSSQKRQTSLSQPKNFANRGMSFEKMINATNDYYLSQGLAVIHKKPTPIQIVQVDYPQRSRAKIVEAYFRQAS
TTDYSGVYNGYYIDFEVKETKQKRAIPMKNFHPHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAFDLIRFYHQDKGQK
SMPLEYIREYGYEIKAGAFPQIPYLNVIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=351437 GL187_RS01815 WP_000248787.1 352887..353483(-) (recU) [Streptococcus pneumoniae strain 563]
ATGGTCAACTATCCACATAAAGTTTCATCACAAAAAAGACAAACATCTCTTTCTCAACCCAAAAATTTCGCAAATCGAGG
AATGTCTTTTGAAAAGATGATCAATGCTACCAACGACTACTATTTGTCTCAAGGCTTGGCTGTTATACATAAGAAACCAA
CTCCTATTCAAATCGTACAAGTGGACTATCCACAACGAAGTCGTGCCAAGATTGTTGAAGCCTATTTTCGACAAGCTTCA
ACGACGGACTATTCTGGCGTTTATAATGGATATTACATCGACTTTGAAGTCAAGGAAACAAAACAAAAACGTGCGATTCC
GATGAAAAATTTTCATCCACATCAGATTCAGCATATGGAACAAGTCCTTGCCCAACAAGGAATCTGCTTTGTCCTTCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTGCCGGCATTCGATTTGATTCGCTTCTATCATCAAGATAAGGGACAAAAA
TCAATGCCACTTGAATATATTCGAGAATATGGATATGAAATCAAGGCTGGTGCCTTCCCTCAAATTCCTTATCTCAATGT
TATCAAAGAACATTTATTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8ZYP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.49

Multiple sequence alignment