Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EZJ17_RS03190 Genome accession   NZ_CP038018
Coordinates   601416..602795 (+) Length   459 a.a.
NCBI ID   WP_067444565.1    Uniprot ID   A0AAX1F6M6
Organism   Eikenella exigua strain PXX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 596416..607795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZJ17_RS03170 (EZJ17_03155) gap 596845..597873 (+) 1029 WP_067442452.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  EZJ17_RS03175 (EZJ17_03160) - 598149..598628 (-) 480 WP_067442450.1 peptidylprolyl isomerase -
  EZJ17_RS03180 (EZJ17_03165) - 599167..600393 (-) 1227 WP_067442448.1 aspartate kinase -
  EZJ17_RS03185 (EZJ17_03170) - 600735..601346 (+) 612 WP_067442445.1 class I SAM-dependent methyltransferase -
  EZJ17_RS03190 (EZJ17_03175) radA 601416..602795 (+) 1380 WP_067444565.1 DNA repair protein RadA Machinery gene
  EZJ17_RS03195 (EZJ17_03180) gloA 603039..603434 (-) 396 WP_067445034.1 lactoylglutathione lyase -
  EZJ17_RS03200 (EZJ17_03185) - 603645..604355 (+) 711 WP_151086097.1 YafY family protein -
  EZJ17_RS03205 (EZJ17_03190) - 604475..605068 (+) 594 WP_067444571.1 glutathione S-transferase family protein -
  EZJ17_RS03210 (EZJ17_03195) - 605135..605797 (-) 663 WP_067442437.1 peptidoglycan DD-metalloendopeptidase family protein -
  EZJ17_RS03215 (EZJ17_03200) - 606099..606509 (-) 411 WP_151086099.1 nuclear transport factor 2 family protein -
  EZJ17_RS03220 (EZJ17_03205) - 606688..607167 (+) 480 WP_067444576.1 FxsA family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49432.16 Da        Isoelectric Point: 7.3637

>NTDB_id=351349 EZJ17_RS03190 WP_067444565.1 601416..602795(+) (radA) [Eikenella exigua strain PXX]
MAKAPKTLYTCTECGGTVPKWQGKCPHCGEWNTLQEGIAAPEPKNARFQSWAADTTQVQELSKVTAAEVPREPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTVALMAKKRKVLYVSGEESAQQVALRAQRLGLDADGVHLLAEIRLEAVQAA
LKQHQPAVVVIDSIQTMYSDQITSAPGSVSQVRECAAQFTRMAKQMGIAMIFVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMLENGLKGVSNPSAIFLASYRDDVAGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFINAVGGVKISEPAADLAVILAMVSSFRNKPLPEKMVAFGEVGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANLPRSKKEFAGLEIFGVERLDEAVRLCRDLAE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=351349 EZJ17_RS03190 WP_067444565.1 601416..602795(+) (radA) [Eikenella exigua strain PXX]
ATGGCCAAAGCCCCCAAAACCCTCTACACCTGCACCGAATGTGGCGGCACCGTGCCCAAGTGGCAGGGCAAATGCCCGCA
CTGCGGCGAGTGGAACACCTTGCAGGAAGGCATCGCCGCGCCTGAGCCGAAAAATGCCCGCTTCCAATCGTGGGCGGCGG
ACACCACGCAAGTGCAGGAACTCTCCAAAGTTACCGCCGCCGAAGTGCCGCGCGAGCCCACCGGCATGGGCGAACTCGAC
CGCGTGCTCGGCGGGGGATTGGTGGATGGCGCGGTGATTTTGTTGGGCGGCGACCCTGGCATCGGCAAATCCACGCTGCT
GCTGCAAACCGTTGCCCTGATGGCGAAAAAACGCAAAGTGCTGTATGTGTCGGGCGAGGAATCGGCGCAACAGGTCGCCC
TGCGTGCACAGCGGTTGGGGCTGGATGCGGACGGCGTGCATTTGCTGGCGGAAATCCGCTTGGAAGCAGTGCAGGCTGCT
TTGAAACAGCACCAGCCCGCCGTGGTGGTCATCGACTCAATTCAAACCATGTATTCCGACCAAATTACTTCCGCGCCCGG
TTCCGTGTCGCAGGTGCGCGAGTGCGCCGCCCAGTTCACGCGCATGGCCAAGCAGATGGGCATCGCCATGATTTTTGTCG
GCCATGTGACCAAGGACGGCGCGATTGCCGGCCCGCGCGTGCTCGAGCACATGGTCGATACCGTGCTGTATTTTGAAGGC
GACCAGCATTCCAACTACCGCATGATTCGCGCCATCAAAAACCGCTTCGGCGCGGCCAATGAGCTGGGCGTGTTCGCCAT
GCTGGAAAACGGCCTCAAAGGCGTGTCCAACCCCTCCGCCATCTTCCTCGCCAGCTACCGCGACGACGTGGCCGGCTCGT
GCGTGCTGGTCACGCAGGAAGGCAGCCGCCCGCTGCTGGTGGAAATCCAAGCGCTGGTGGACGACGCGCACGGCTTCACG
CCCAAACGGCTCACCGTTGGCTTGGAGCAAAACCGCCTCGCCATGCTCTTGGCCGTGCTCAACCGCCACGCCGGCATCGC
CTGCTTCGACCAAGACGTGTTCATCAACGCCGTGGGCGGCGTGAAAATCAGCGAGCCGGCGGCGGATTTGGCGGTGATTC
TGGCGATGGTGTCCAGCTTCCGCAACAAGCCGCTGCCCGAAAAAATGGTGGCCTTCGGCGAAGTCGGCCTGAGCGGCGAA
GTGCGCCCCGTGGCACGCGGGCAAGAGCGGCTGAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTGCCCAAAGC
CAACCTGCCGCGCAGCAAAAAAGAATTTGCCGGACTGGAAATTTTCGGTGTGGAACGGCTGGACGAGGCGGTGCGGCTGT
GCAGGGATTTGGCGGAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

AAA domain (AAA_25)

(78-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.439

99.346

0.501
  radA Streptococcus mitis NCTC 12261

47.357

98.911

0.468
  radA Streptococcus mitis SK321

47.345

98.475

0.466
  radA Streptococcus pneumoniae TIGR4

49.184

93.464

0.46
  radA Streptococcus pneumoniae R6

49.184

93.464

0.46
  radA Streptococcus pneumoniae Rx1

49.184

93.464

0.46
  radA Streptococcus pneumoniae D39

49.184

93.464

0.46

Multiple sequence alignment