Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   EZJ17_RS02870 Genome accession   NZ_CP038018
Coordinates   544685..546385 (+) Length   566 a.a.
NCBI ID   WP_067445026.1    Uniprot ID   -
Organism   Eikenella exigua strain PXX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 539685..551385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZJ17_RS02830 (EZJ17_02815) - 539832..540173 (-) 342 WP_064083853.1 zinc ribbon domain-containing protein YjdM -
  EZJ17_RS10765 - 540359..540508 (-) 150 WP_255361159.1 DUF2625 family protein -
  EZJ17_RS02835 (EZJ17_02820) - 540444..541037 (-) 594 WP_255361160.1 DUF2625 family protein -
  EZJ17_RS10505 - 541200..541391 (-) 192 WP_231868068.1 hypothetical protein -
  EZJ17_RS02845 (EZJ17_02830) - 541556..541885 (-) 330 WP_067444503.1 hypothetical protein -
  EZJ17_RS02850 (EZJ17_02835) - 541982..542276 (-) 295 Protein_559 hypothetical protein -
  EZJ17_RS02855 (EZJ17_02840) - 542385..542573 (-) 189 WP_067442537.1 hypothetical protein -
  EZJ17_RS02860 (EZJ17_02845) - 542786..543193 (-) 408 WP_067444507.1 hypothetical protein -
  EZJ17_RS02865 (EZJ17_02850) - 543360..544276 (-) 917 Protein_562 aconitase family protein -
  EZJ17_RS02870 (EZJ17_02855) recD 544685..546385 (+) 1701 WP_067445026.1 exodeoxyribonuclease V subunit alpha Machinery gene
  EZJ17_RS02875 (EZJ17_02860) prmB 546592..547491 (-) 900 WP_067444510.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  EZJ17_RS02880 (EZJ17_02865) - 547601..548029 (+) 429 WP_151086082.1 hypothetical protein -
  EZJ17_RS02885 (EZJ17_02870) - 548020..548214 (+) 195 Protein_566 deferrochelatase/peroxidase EfeB -
  EZJ17_RS02890 (EZJ17_02875) rnr 548600..550978 (-) 2379 WP_067444516.1 ribonuclease R -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 61266.24 Da        Isoelectric Point: 7.8955

>NTDB_id=351348 EZJ17_RS02870 WP_067445026.1 544685..546385(+) (recD) [Eikenella exigua strain PXX]
MIEYRYFAAQAAAEMLQRLAPQAAAPVLPLLDELFAAQEGGHSYITLTPQEADALRQAAPVVGDGSDFTPLVLRGRRLFS
GRLFALERSVAAELRRIARGRVRLPENAGLRQRLCDWFPDAGHNEQRLAAALAVLQPLMLVTGGPGTGKTTTVAKLLALL
CANAAEMPRVALIAPTGKAAAHMTRSLHRALSGFKVGSEQVLQHLTALEGQTVHRLLKLNTTGRRKFDREQPLPFDIVVA
DEASMLDLPLLHQLLCAIPEHGRLILLGDENQLPPVGIGAVLSVLAQPTVLTAEEAAKLAEWLPEGVPFEVRENPPPLAG
NVARLEYSHRFDPQRGVGALAQAVVSGEVAAAEAAFARFTDDLFRLPETPAALARRFAKQHEAYWQAVSSGDPVACFTAQ
QQLVVLAARRSQAAEFNHEYRKLLAAQGRAAEQGWFAGQVLMVAENDYAVKVFNGDIGIVLPHGDGLAAFFPDAGGFRAV
SLSRLPAHDTAFAMTVHKSQGSEYQEVWLLGDEADSALFDRTLLYTAITRARRRFGYAGQMSALAAAVQRKNHRRTGLGE
ALRLAA

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=351348 EZJ17_RS02870 WP_067445026.1 544685..546385(+) (recD) [Eikenella exigua strain PXX]
ATGATCGAATATCGCTACTTCGCCGCCCAAGCCGCTGCCGAAATGTTGCAGCGTTTGGCACCGCAGGCTGCCGCGCCGGT
GCTGCCGCTGCTGGACGAACTGTTTGCCGCGCAAGAGGGCGGCCACAGCTACATCACGCTTACGCCGCAAGAGGCGGATG
CGCTGCGTCAGGCCGCGCCGGTGGTGGGCGATGGCAGCGACTTCACGCCTTTGGTATTGCGCGGGCGGCGGCTGTTTAGC
GGCAGACTGTTTGCGCTGGAGCGCAGTGTGGCTGCCGAATTGCGGCGGATTGCCCGCGGTCGGGTGAGGCTACCTGAAAA
TGCCGGGCTGCGGCAGCGTTTGTGCGATTGGTTTCCCGATGCCGGGCATAACGAGCAGCGGCTGGCTGCCGCGCTGGCGG
TGTTACAACCGCTGATGCTGGTCACCGGCGGGCCGGGTACGGGCAAAACCACCACCGTGGCCAAGCTGTTGGCGCTGCTG
TGTGCCAATGCGGCCGAGATGCCGCGCGTTGCGCTCATCGCTCCCACCGGTAAGGCTGCCGCTCACATGACCCGTTCGCT
GCACCGCGCGTTGAGTGGCTTTAAGGTGGGTAGCGAGCAGGTGTTGCAGCATTTAACGGCATTGGAAGGACAAACTGTCC
ACCGTTTGTTGAAACTGAACACCACTGGCCGCCGCAAATTTGACCGCGAGCAGCCGCTGCCATTTGATATTGTGGTGGCC
GATGAGGCTTCCATGCTGGATCTGCCGCTGCTGCACCAATTATTGTGTGCCATTCCCGAGCATGGCCGCCTGATTTTGTT
GGGCGATGAAAACCAGCTGCCGCCGGTGGGCATCGGTGCTGTATTGTCCGTACTGGCACAGCCCACCGTGCTCACTGCCG
AAGAAGCCGCTAAGTTGGCAGAATGGCTGCCCGAAGGCGTGCCGTTTGAGGTGCGGGAGAACCCGCCGCCACTGGCCGGC
AATGTGGCGCGGCTGGAATACAGCCACCGTTTCGACCCGCAGCGTGGCGTGGGCGCACTGGCGCAGGCCGTGGTGAGCGG
CGAGGTTGCTGCTGCCGAAGCTGCGTTTGCCCGCTTCACCGACGATTTATTCAGGCTACCTGAAACCCCTGCCGCCTTGG
CACGCCGATTTGCCAAACAGCACGAAGCCTATTGGCAGGCGGTAAGCAGCGGCGACCCGGTGGCCTGCTTCACCGCCCAG
CAGCAGTTGGTGGTGCTGGCCGCACGGCGCAGCCAGGCGGCGGAGTTCAACCACGAATACCGCAAGCTCCTGGCTGCGCA
GGGCAGAGCGGCGGAACAGGGCTGGTTTGCCGGGCAGGTGCTGATGGTGGCGGAAAACGATTATGCGGTGAAAGTGTTCA
ATGGCGACATCGGCATCGTGCTGCCGCACGGCGATGGGCTGGCTGCGTTTTTCCCCGATGCCGGCGGTTTCCGTGCCGTA
TCGCTCAGCCGTCTGCCCGCGCACGATACCGCCTTCGCCATGACCGTACACAAAAGCCAAGGCTCGGAATACCAAGAAGT
GTGGCTCTTGGGCGATGAAGCCGATTCTGCCCTATTCGACCGCACCCTGCTCTACACCGCCATCACCCGCGCCCGCCGCC
GCTTCGGCTACGCCGGCCAGATGAGCGCCCTAGCCGCCGCTGTGCAACGCAAAAACCACCGCCGTACCGGTTTGGGCGAG
GCGTTGCGTTTGGCAGCTTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(491-533)

AAA domain (AAA_19)

(126-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

50.446

99.117

0.5

Multiple sequence alignment