Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   E2636_RS07305 Genome accession   NZ_CP038015
Coordinates   1446821..1448515 (+) Length   564 a.a.
NCBI ID   WP_134209609.1    Uniprot ID   A0A4P6ZZG2
Organism   Paenisporosarcina antarctica strain CGMCC 1.6503     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1441821..1453515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2636_RS07280 (E2636_07280) xseB 1442331..1442573 (+) 243 WP_134209605.1 exodeoxyribonuclease VII small subunit -
  E2636_RS07285 (E2636_07285) - 1442570..1443451 (+) 882 WP_134209606.1 polyprenyl synthetase family protein -
  E2636_RS07290 (E2636_07290) dxs 1443531..1445438 (+) 1908 WP_134209607.1 1-deoxy-D-xylulose-5-phosphate synthase -
  E2636_RS07295 (E2636_07295) - 1445435..1446253 (+) 819 WP_134209608.1 TlyA family RNA methyltransferase -
  E2636_RS07300 (E2636_07300) ahrC 1446355..1446804 (+) 450 WP_017380059.1 transcriptional regulator AhrC/ArgR -
  E2636_RS07305 (E2636_07305) recN 1446821..1448515 (+) 1695 WP_134209609.1 DNA repair protein RecN Machinery gene
  E2636_RS07310 (E2636_07310) - 1448627..1449586 (+) 960 WP_134209610.1 SpoIVB peptidase S55 domain-containing protein -
  E2636_RS07315 (E2636_07315) spo0A 1449849..1450640 (+) 792 WP_134209611.1 sporulation transcription factor Spo0A -
  E2636_RS07320 (E2636_07320) - 1450765..1451490 (+) 726 WP_134209612.1 glycerophosphodiester phosphodiesterase family protein -
  E2636_RS07325 (E2636_07325) - 1451499..1451744 (-) 246 WP_134209613.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 63649.62 Da        Isoelectric Point: 5.1461

>NTDB_id=351313 E2636_RS07305 WP_134209609.1 1446821..1448515(+) (recN) [Paenisporosarcina antarctica strain CGMCC 1.6503]
MLKELTIKNFAIIEEISVSFSDGLTVLTGETGAGKSIIIDAVHLLSGGRGSQEFIRHGAKKAELEGLFYIQNPQHPVFRK
LLDVGIETDDDSIILRRDINDHGKSVCRVNGKLVTIAILREIGGSLIDIHGQHESQELMDERLHISLLDQFSGSKLHRAK
ASYFGLFQTYTKFKKELAAVSENEQQIAQKIDLYQYQINEIDSTELIEDEDEKLQLERKKFQNYHKTFERISAAYEALNG
ETKGLDWIGNAMSELEDVASFDEAYKGQAELVSNTFYSLQELSYQLKSEMDESEFDEERLNVIEERLAVIQLLKRKYGNS
IEEIMIYREKIGDELDALVNRDERIQQRQKALDQVVIDLEIEAKELTLYRKKASKKLSEAIVLQLRELFMEKATFEVIFN
TASNFDKNGKDDVAFYMSTNVGEPAKPISKIASGGELSRMMLALKGIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKIAH
ISHSSQVLCITHLPQVAAMADQQLLIKKEVTGERTMTKLIEVIGKSRVQEVSRMMSGAEITTLTLEHATELLSIAEQRKK
LLHA

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=351313 E2636_RS07305 WP_134209609.1 1446821..1448515(+) (recN) [Paenisporosarcina antarctica strain CGMCC 1.6503]
GTGTTAAAAGAATTAACTATTAAAAATTTCGCTATAATTGAAGAAATATCGGTGAGTTTTTCAGATGGTTTGACGGTTCT
AACAGGGGAAACTGGGGCAGGTAAATCTATTATTATTGATGCTGTGCATTTGCTATCCGGAGGGAGAGGTTCTCAAGAAT
TCATCCGTCACGGTGCAAAAAAAGCAGAACTTGAAGGTCTATTTTATATACAAAATCCACAACATCCAGTATTTCGAAAA
TTGCTGGATGTAGGAATTGAAACAGATGATGATTCCATTATTTTAAGAAGAGATATTAATGATCATGGGAAGAGTGTTTG
TCGTGTAAATGGAAAGCTTGTTACGATTGCAATCTTACGAGAAATTGGCGGGTCGTTAATTGATATCCATGGACAACATG
AGAGTCAGGAATTAATGGATGAACGTTTACATATTTCGCTACTTGATCAATTTTCTGGGAGTAAGCTTCATCGCGCAAAG
GCTAGCTATTTTGGTCTCTTCCAAACATACACAAAATTTAAAAAAGAACTGGCGGCTGTCAGTGAAAATGAACAACAAAT
TGCTCAAAAAATTGATTTGTATCAATACCAAATCAATGAAATCGATTCTACAGAATTAATTGAAGATGAAGATGAAAAAC
TTCAATTAGAGCGTAAGAAATTTCAGAACTATCATAAAACATTTGAACGTATTTCTGCTGCTTATGAAGCGTTAAATGGC
GAAACAAAAGGGTTGGATTGGATTGGTAATGCGATGAGTGAACTTGAGGATGTTGCATCATTTGATGAGGCATACAAAGG
ACAAGCGGAACTTGTATCTAATACTTTTTATTCCCTTCAAGAATTATCGTATCAATTAAAAAGTGAAATGGATGAATCTG
AATTTGATGAAGAACGCTTAAACGTCATTGAAGAAAGATTAGCCGTCATCCAATTACTAAAACGCAAATATGGAAATTCG
ATTGAAGAAATCATGATATATCGCGAAAAAATTGGTGATGAGCTAGATGCACTTGTGAATAGGGATGAACGAATACAACA
ACGCCAAAAAGCACTTGATCAAGTCGTTATAGATTTGGAAATTGAAGCAAAAGAGTTAACTTTATATCGGAAAAAAGCGT
CAAAAAAATTAAGCGAAGCCATAGTGTTACAACTTCGAGAATTATTTATGGAAAAAGCTACTTTTGAAGTGATTTTCAAT
ACAGCAAGTAATTTTGATAAAAATGGAAAAGATGATGTGGCTTTTTATATGTCAACAAATGTTGGAGAACCAGCTAAACC
CATTTCTAAAATTGCATCTGGCGGAGAATTGTCTCGAATGATGCTTGCACTCAAAGGGATTTTTTCAAAACATCAAGGGA
TTACGTCCATTATTTTTGATGAAGTGGATACTGGTGTTAGTGGTAGGGTAGCGCAAGCAATTGCGGAAAAGATTGCTCAT
ATTTCACATTCTTCTCAAGTTTTATGTATTACCCATCTTCCTCAAGTTGCCGCGATGGCTGACCAACAATTATTAATAAA
AAAAGAAGTAACCGGCGAAAGAACGATGACAAAGCTAATAGAAGTTATCGGCAAAAGTCGTGTTCAAGAAGTCAGTCGGA
TGATGTCTGGAGCTGAAATTACGACATTAACTTTGGAACATGCAACCGAATTACTGTCAATTGCAGAACAACGAAAAAAA
TTATTACATGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P6ZZG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.962

100

0.539

Multiple sequence alignment