Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GL188_RS11095 Genome accession   NZ_CP046359
Coordinates   1441664..1442386 (-) Length   240 a.a.
NCBI ID   WP_024477841.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 573     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1436664..1447386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL188_RS07245 (GL188_07375) - 1439239..1440405 (-) 1167 WP_024477840.1 MalY/PatB family protein -
  GL188_RS07250 (GL188_07380) - 1440413..1441507 (-) 1095 WP_000031964.1 cystathionine gamma-synthase -
  GL188_RS11095 rcrP 1441664..1442386 (-) 723 WP_024477841.1 ABC transporter ATP-binding protein Regulator
  GL188_RS11100 - 1442390..1443346 (-) 957 WP_024477842.1 ABC transporter ATP-binding protein -
  GL188_RS07260 (GL188_07390) amiA 1443518..1445476 (-) 1959 WP_197120256.1 peptide ABC transporter substrate-binding protein Regulator
  GL188_RS07265 (GL188_07395) - 1445680..1447302 (-) 1623 WP_197120257.1 putative polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27102.94 Da        Isoelectric Point: 5.0452

>NTDB_id=351300 GL188_RS11095 WP_024477841.1 1441664..1442386(-) (rcrP) [Streptococcus pneumoniae strain 573]
MNFNHVYFGYDENRPVLKDITCSIFKGKKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHSLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=351300 GL188_RS11095 WP_024477841.1 1441664..1442386(-) (rcrP) [Streptococcus pneumoniae strain 573]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GAAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAGCCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATAGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.82

99.583

0.367
  comA Streptococcus mitis SK321

37.179

97.5

0.362

Multiple sequence alignment